Variant report

Variant	rs28588007
Chromosome Location	chr15:40780153-40780154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12101791	1.00[AMR][1000 genomes]
rs34445444	1.00[AMR][1000 genomes]
rs57205211	0.84[AFR][1000 genomes]
rs57834133	0.84[AFR][1000 genomes]
rs7162522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384313	0.83[AFR][1000 genomes]
rs73389072	0.84[AFR][1000 genomes]
rs73389084	0.84[AFR][1000 genomes]
rs8040302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042419	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40779200-40780200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40779600-40780200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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