Variant report
| Variant | rs8040302 |
|---|---|
| Chromosome Location | chr15:40777695-40777696 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244251 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12101791 | 1.00[AMR][1000 genomes] |
| rs28588007 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs34445444 | 1.00[AMR][1000 genomes] |
| rs57205211 | 0.85[AFR][1000 genomes] |
| rs57834133 | 0.85[AFR][1000 genomes] |
| rs7162522 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73384313 | 0.84[AFR][1000 genomes] |
| rs73389072 | 0.85[AFR][1000 genomes] |
| rs73389084 | 0.85[AFR][1000 genomes] |
| rs7342634 | 0.81[AFR][1000 genomes] |
| rs8042419 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34145 | chr15:40549617-40889824 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
