Variant report

Variant	rs28589439
Chromosome Location	chr15:92618035-92618036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92611564..92613241-chr15:92617063..92619542,2	MCF-7	breast:
2	chr15:92397561..92399407-chr15:92617258..92620011,2	MCF-7	breast:
3	chr15:92617275..92618908-chr15:92634288..92637131,2	K562	blood:
4	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:
5	chr15:92496027..92498083-chr15:92616983..92618525,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28360724	0.83[EUR][1000 genomes]
rs28361309	0.83[EUR][1000 genomes]
rs28458969	0.83[EUR][1000 genomes]
rs28502579	0.83[EUR][1000 genomes]
rs28538166	0.83[EUR][1000 genomes]
rs28631943	1.00[EUR][1000 genomes]
rs28656147	0.83[EUR][1000 genomes]
rs28660218	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
2	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
3	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:92613600-92620000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:92614200-92621000	Enhancers	Fetal Heart	heart
7	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
8	chr15:92614400-92621000	Enhancers	Lung	lung
9	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
10	chr15:92615000-92619400	Weak transcription	Fetal Brain Male	brain
11	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:92615200-92618200	Weak transcription	Esophagus	oesophagus
13	chr15:92615200-92619200	Weak transcription	Fetal Brain Female	brain
14	chr15:92615800-92618200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:92616200-92619000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:92616200-92621000	Enhancers	Left Ventricle	heart
17	chr15:92616400-92619200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:92616400-92619400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:92616400-92619600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:92616400-92621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:92616600-92618800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:92616600-92619400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:92616600-92620200	Enhancers	Primary hematopoietic stem cells	blood
24	chr15:92616600-92622800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:92616800-92619400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr15:92616800-92619600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:92616800-92620800	Enhancers	Right Atrium	heart
28	chr15:92616800-92621600	Enhancers	Right Ventricle	heart
29	chr15:92617000-92621200	Enhancers	Brain Cingulate Gyrus	brain
30	chr15:92617400-92618200	Enhancers	Osteobl	bone
31	chr15:92617400-92618600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:92617400-92618800	Enhancers	NHEK	skin
33	chr15:92617400-92619000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:92617400-92619200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:92617400-92620200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:92617400-92621000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:92617400-92621000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:92617400-92621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:92617600-92618200	Enhancers	GM12878-XiMat	blood
40	chr15:92617600-92618200	Enhancers	HMEC	breast
41	chr15:92617600-92618200	Enhancers	NHLF	lung
42	chr15:92617600-92618400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:92617600-92618400	Bivalent Enhancer	Fetal Muscle Leg	muscle
44	chr15:92617600-92618400	Enhancers	A549	lung
45	chr15:92617600-92618400	Enhancers	NH-A	brain
46	chr15:92617600-92619000	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:92617600-92619200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:92617600-92619200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:92617600-92619200	Enhancers	Stomach Mucosa	stomach
50	chr15:92617600-92619600	Enhancers	Brain Inferior Temporal Lobe	brain

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