Variant report

Variant	rs28590475
Chromosome Location	chr18:40234363-40234364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1036079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1036080	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976378	1.00[EUR][1000 genomes]
rs16976528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1964355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28462375	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28838875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60297859	1.00[EUR][1000 genomes]
rs60628217	1.00[EUR][1000 genomes]
rs61465192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs714296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7232281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233685	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73478552	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8084707	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9955701	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9960152	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9966677	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40230200-40241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:40233400-40234400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:40233400-40234800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr18:40233800-40234600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:40234000-40235200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr18:40234200-40234600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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