Variant report

Variant	rs28838875
Chromosome Location	chr18:40241013-40241014
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1036079	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1036080	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11873965	0.83[EUR][1000 genomes]
rs16976528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1943176	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1964355	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28590475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61465192	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs714296	1.00[AMR][1000 genomes]
rs7232281	0.89[AMR][1000 genomes]
rs7233685	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478552	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73951742	0.83[EUR][1000 genomes]
rs8084707	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9947820	0.83[EUR][1000 genomes]
rs9955701	0.81[AFR][1000 genomes]
rs9960152	0.89[AMR][1000 genomes]
rs9964370	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40230200-40241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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