Variant report

Variant	rs2859379
Chromosome Location	chr6:28358195-28358196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28306214..28308475-chr6:28356791..28358478,2	K562	blood:
2	chr6:28186542..28189302-chr6:28356696..28358349,2	K562	blood:
3	chr6:28356707..28359445-chr6:28388134..28391982,4	K562	blood:
4	chr6:28356866..28359445-chr6:28388346..28391982,3	K562	blood:
5	chr6:28352795..28355228-chr6:28357917..28359743,2	MCF-7	breast:
6	chr6:28305023..28307714-chr6:28355958..28358291,2	K562	blood:

Variant related genes	Relation type
ENSG00000176933	Chromatin interaction

rs_ID	r²[population]
rs11966042	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs16894116	1.00[JPT][hapmap]
rs16901847	1.00[JPT][hapmap]
rs213227	1.00[CHB][hapmap]
rs2232428	1.00[JPT][hapmap]
rs2531801	1.00[CHB][hapmap]
rs2531816	1.00[CHD][hapmap]
rs2531828	1.00[CHB][hapmap]
rs2859367	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2859376	1.00[CHD][hapmap]
rs6916243	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs719370	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7759845	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28324600-28358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28345000-28361600	Strong transcription	Dnd41	blood
3	chr6:28350400-28358200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:28350400-28358200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:28351200-28358200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:28351600-28358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:28351600-28358200	Weak transcription	Fetal Brain Male	brain
8	chr6:28351600-28358200	Weak transcription	Right Ventricle	heart
9	chr6:28351600-28358200	Weak transcription	Spleen	Spleen
10	chr6:28351600-28358200	Weak transcription	HSMMtube	muscle
11	chr6:28351600-28358400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:28351600-28358400	Weak transcription	Colonic Mucosa	Colon
13	chr6:28351600-28358400	Weak transcription	Gastric	stomach
14	chr6:28351600-28358400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:28351600-28358400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:28351600-28358600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:28351600-28358600	Weak transcription	Psoas Muscle	Psoas
18	chr6:28351600-28364600	Weak transcription	Right Atrium	heart
19	chr6:28351800-28358200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:28351800-28358400	Weak transcription	Fetal Heart	heart
21	chr6:28352000-28358200	Weak transcription	Stomach Mucosa	stomach
22	chr6:28352000-28362000	Strong transcription	Primary T cells from cord blood	blood
23	chr6:28352200-28358400	Weak transcription	Hela-S3	cervix
24	chr6:28352200-28365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:28352400-28358200	Strong transcription	K562	blood
26	chr6:28352400-28361400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:28352600-28361800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:28352600-28362000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:28352600-28362600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:28352600-28364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:28352600-28364400	Strong transcription	Fetal Thymus	thymus
32	chr6:28352600-28364600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:28352600-28365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:28352600-28365800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:28352800-28361000	Strong transcription	Brain Anterior Caudate	brain
36	chr6:28353000-28359400	Strong transcription	Fetal Brain Female	brain
37	chr6:28353000-28361000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:28353000-28361000	Strong transcription	Fetal Intestine Large	intestine
39	chr6:28353000-28361400	Strong transcription	Brain Germinal Matrix	brain
40	chr6:28353000-28361600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:28353000-28361800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:28353000-28362200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:28353000-28364800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:28353200-28361200	Strong transcription	HepG2	liver
45	chr6:28353200-28361400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:28353200-28362000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:28353400-28361000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:28353400-28361200	Strong transcription	Liver	Liver
49	chr6:28353600-28359600	Strong transcription	Brain Cingulate Gyrus	brain
50	chr6:28353600-28360800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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