Variant report

Variant	rs2531816
Chromosome Location	chr6:28442106-28442107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28439833..28442457-chr6:28444087..28445885,2	K562	blood:
2	chr6:28422985..28425247-chr6:28440349..28442926,2	K562	blood:
3	chr6:28436210..28439439-chr6:28440893..28443830,3	K562	blood:
4	chr6:28441214..28445163-chr6:28446286..28449658,4	K562	blood:
5	chr6:28439477..28442256-chr6:28509445..28511862,2	K562	blood:
6	chr6:28302344..28303875-chr6:28441340..28443590,2	K562	blood:
7	chr6:28440403..28442381-chr6:28583746..28585382,2	K562	blood:
8	chr6:28440523..28445742-chr6:28446027..28449241,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000219262	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes]
rs11965542	0.82[EUR][1000 genomes]
rs11966042	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs11966237	0.82[EUR][1000 genomes]
rs11969150	0.82[EUR][1000 genomes]
rs11970404	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes]
rs2108924	1.00[CEU][hapmap]
rs213227	1.00[CEU][hapmap]
rs213235	0.82[EUR][1000 genomes]
rs2159274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2531801	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2531802	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2531812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes]
rs2531826	0.82[EUR][1000 genomes]
rs2531828	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28382592	0.82[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes]
rs2859350	0.91[EUR][1000 genomes]
rs2859353	0.82[EUR][1000 genomes]
rs2859354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs2859359	0.82[EUR][1000 genomes]
rs2859362	0.82[EUR][1000 genomes]
rs2859367	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2859371	0.91[EUR][1000 genomes]
rs2859375	1.00[CEU][hapmap]
rs2859376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2859377	0.91[EUR][1000 genomes]
rs2859378	0.91[EUR][1000 genomes]
rs2859379	1.00[CHD][hapmap]
rs385908	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs400987	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs403774	0.91[EUR][1000 genomes]
rs423118	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59457415	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61540948	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62638680	0.82[EUR][1000 genomes]
rs6916243	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs6932394	0.82[EUR][1000 genomes]
rs719370	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs73385806	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73385807	0.82[EUR][1000 genomes]
rs73385810	0.82[EUR][1000 genomes]
rs73385818	0.82[EUR][1000 genomes]
rs73385870	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73387810	0.82[EUR][1000 genomes]
rs73399084	0.82[EUR][1000 genomes]
rs73401012	0.82[EUR][1000 genomes]
rs73401666	0.82[EUR][1000 genomes]
rs73401671	0.85[AFR][1000 genomes]
rs73402513	0.82[EUR][1000 genomes]
rs7739389	0.82[EUR][1000 genomes]
rs7759845	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28436800-28442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28438600-28442400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:28442000-28443400	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links