Variant report

Variant	rs73387810
Chromosome Location	chr6:28318166-28318167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28247642..28250446-chr6:28317779..28319288,2	K562	blood:
2	chr6:28249255..28252885-chr6:28315781..28319284,4	K562	blood:
3	chr6:28247366..28250224-chr6:28317764..28319401,2	MCF-7	breast:
4	chr6:28103114..28106211-chr6:28315199..28319125,3	K562	blood:
5	chr6:28314766..28319001-chr6:28320941..28324187,4	MCF-7	breast:
6	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
7	chr6:28127970..28130555-chr6:28316475..28318965,2	K562	blood:
8	chr6:27636377..27638707-chr6:28318162..28320333,2	K562	blood:
9	chr6:28300850..28305636-chr6:28315212..28320749,12	MCF-7	breast:
10	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
11	chr6:28218194..28221046-chr6:28316270..28319035,4	K562	blood:
12	chr6:28219546..28223731-chr6:28316147..28319107,5	K562	blood:
13	chr6:28101857..28106060-chr6:28315199..28321034,6	K562	blood:
14	chr6:28315597..28319153-chr6:28366055..28369015,3	K562	blood:
15	chr6:28317772..28319708-chr6:28509467..28511768,2	K562	blood:
16	chr6:28233021..28237962-chr6:28316234..28324041,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137338	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000261839	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes]
rs1150671	0.91[EUR][1000 genomes]
rs11965542	1.00[EUR][1000 genomes]
rs11966042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966237	1.00[EUR][1000 genomes]
rs11967622	0.91[EUR][1000 genomes]
rs11969150	1.00[EUR][1000 genomes]
rs11970404	0.91[EUR][1000 genomes]
rs12333002	0.82[EUR][1000 genomes]
rs1233667	0.91[EUR][1000 genomes]
rs1233698	0.91[EUR][1000 genomes]
rs1233702	0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes]
rs213227	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213235	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159274	0.91[EUR][1000 genomes]
rs2232439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2531801	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531802	0.91[EUR][1000 genomes]
rs2531812	0.91[EUR][1000 genomes]
rs2531816	0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes]
rs2531826	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531828	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28382592	0.82[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes]
rs2859350	0.91[EUR][1000 genomes]
rs2859353	0.82[EUR][1000 genomes]
rs2859354	0.91[EUR][1000 genomes]
rs2859359	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859362	1.00[EUR][1000 genomes]
rs2859367	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859371	0.91[EUR][1000 genomes]
rs2859376	0.91[EUR][1000 genomes]
rs2859377	0.91[EUR][1000 genomes]
rs2859378	0.91[EUR][1000 genomes]
rs385908	0.91[EUR][1000 genomes]
rs400987	0.91[EUR][1000 genomes]
rs403774	0.91[EUR][1000 genomes]
rs423118	0.91[EUR][1000 genomes]
rs59457415	1.00[EUR][1000 genomes]
rs61540948	0.91[EUR][1000 genomes]
rs62638680	1.00[EUR][1000 genomes]
rs6908414	0.91[EUR][1000 genomes]
rs6910942	0.91[EUR][1000 genomes]
rs6916243	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924324	0.91[EUR][1000 genomes]
rs6928131	0.91[EUR][1000 genomes]
rs6932313	0.91[EUR][1000 genomes]
rs6932394	1.00[EUR][1000 genomes]
rs719370	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73385806	1.00[EUR][1000 genomes]
rs73385807	1.00[EUR][1000 genomes]
rs73385810	1.00[EUR][1000 genomes]
rs73385818	1.00[EUR][1000 genomes]
rs73385870	1.00[EUR][1000 genomes]
rs73398516	0.91[EUR][1000 genomes]
rs73399084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	0.91[EUR][1000 genomes]
rs73400579	0.91[EUR][1000 genomes]
rs73400580	1.00[EUR][1000 genomes]
rs73400590	1.00[EUR][1000 genomes]
rs73401012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402513	1.00[EUR][1000 genomes]
rs7739389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752608	1.00[ASN][1000 genomes]
rs7759845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468291	0.91[EUR][1000 genomes]
rs9468293	0.91[EUR][1000 genomes]
rs9468305	0.91[EUR][1000 genomes]
rs9468306	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28317000-28318200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:28317000-28318200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:28317000-28318200	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr6:28317000-28318200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:28317000-28318200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:28317000-28318200	Active TSS	Brain Germinal Matrix	brain
7	chr6:28317000-28318200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:28317000-28318200	Active TSS	Fetal Lung	lung
9	chr6:28317000-28318200	Active TSS	HMEC	breast
10	chr6:28317000-28318200	Active TSS	NHEK	skin
11	chr6:28317000-28318400	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:28317000-28318400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:28317000-28318400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:28317000-28318400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:28317000-28318800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:28317000-28319000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr6:28317000-28319000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr6:28317200-28318200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:28317200-28318200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr6:28317200-28318200	Active TSS	Muscle Satellite Cultured Cells	--
21	chr6:28317200-28318200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:28317200-28318200	Active TSS	Brain Hippocampus Middle	brain
23	chr6:28317200-28318200	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr6:28317200-28318200	Active TSS	Brain Substantia Nigra	brain
25	chr6:28317200-28318200	Active TSS	Colon Smooth Muscle	Colon
26	chr6:28317200-28318200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr6:28317200-28318200	Active TSS	Fetal Brain Male	brain
28	chr6:28317200-28318200	Active TSS	Fetal Muscle Leg	muscle
29	chr6:28317200-28318200	Active TSS	Psoas Muscle	Psoas
30	chr6:28317200-28318200	Active TSS	Right Ventricle	heart
31	chr6:28317200-28318200	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr6:28317200-28318200	Active TSS	Thymus	Thymus
33	chr6:28317200-28318200	Active TSS	Hela-S3	cervix
34	chr6:28317200-28318400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:28317200-28318400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:28317200-28318400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:28317200-28318400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:28317200-28318400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:28317200-28318400	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:28317200-28318400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:28317200-28318400	Active TSS	Aorta	Aorta
42	chr6:28317200-28318400	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr6:28317200-28318400	Active TSS	Fetal Heart	heart
44	chr6:28317200-28318400	Active TSS	Fetal Intestine Large	intestine
45	chr6:28317200-28318400	Active TSS	Fetal Kidney	kidney
46	chr6:28317200-28318400	Active TSS	Fetal Muscle Trunk	muscle
47	chr6:28317200-28318400	Active TSS	Placenta	Placenta
48	chr6:28317200-28318400	Active TSS	Left Ventricle	heart
49	chr6:28317200-28318400	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:28317200-28318400	Active TSS	A549	lung

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