Variant report

Variant	rs1233698
Chromosome Location	chr6:28169623-28169624
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28145972..28147605-chr6:28169544..28171474,2	K562	blood:
2	chr6:28168282..28171016-chr6:28193123..28195287,2	K562	blood:
3	chr6:28169001..28171000-chr6:28171450..28173526,2	K562	blood:
4	chr6:28164945..28167358-chr6:28168626..28171324,2	MCF-7	breast:
5	chr6:28166299..28169743-chr6:28173090..28175496,4	K562	blood:
6	chr6:28167517..28171168-chr6:28177888..28180588,3	K562	blood:
7	chr6:28166974..28169940-chr6:28315541..28317306,2	K562	blood:

Variant related genes	Relation type
ENSG00000137185	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150669	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966042	1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs11970404	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12333002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233702	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213227	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2531801	0.91[EUR][1000 genomes]
rs2531802	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	0.91[EUR][1000 genomes]
rs28366687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs59457415	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61540948	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916243	1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs6922530	1.00[AMR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs719370	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385870	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73398516	1.00[EUR][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73400525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400580	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400590	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7759845	1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs9468261	1.00[AMR][1000 genomes]
rs9468262	1.00[AMR][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883514	chr6:28155418-28185726	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv883515	chr6:28156476-28181675	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv883516	chr6:28156476-28185726	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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