Variant report

Variant	rs9468262
Chromosome Location	chr6:27933195-27933196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27932549..27935599-chr6:27943832..27947196,3	K562	blood:

Variant related genes	Relation type
ENSG00000216629	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1150669	0.89[AMR][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs11962485	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333002	0.89[AMR][1000 genomes]
rs1233667	0.89[AMR][1000 genomes]
rs1233698	1.00[AMR][1000 genomes]
rs1233702	1.00[AMR][1000 genomes]
rs200471	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28366687	1.00[AMR][1000 genomes]
rs57414310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61072813	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901437	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs6915101	1.00[CEU][hapmap]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6936952	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs73384352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386634	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386656	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392701	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	1.00[AMR][1000 genomes]
rs7748537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468227	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9468253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468257	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9468305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27932600-27935800	Enhancers	Primary B cells from peripheral blood	blood

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