Variant report

Variant	rs6928131
Chromosome Location	chr6:28125449-28125450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28125159-28125731	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:28124937-28125712	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28123814..28127581-chr6:28129241..28131272,3	MCF-7	breast:
2	chr6:28124753..28127953-chr6:28128096..28131158,4	K562	blood:

Variant related genes	Relation type
ZNF192P1	TF binding region
ENSG00000226314	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150669	1.00[EUR][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11962485	1.00[AMR][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	0.91[EUR][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs28366687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs57484227	0.85[AFR][1000 genomes]
rs59457415	0.91[EUR][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916243	0.91[EUR][1000 genomes]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes]
rs73385807	0.91[EUR][1000 genomes]
rs73385810	0.91[EUR][1000 genomes]
rs73385818	0.91[EUR][1000 genomes]
rs73385870	0.91[EUR][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73392698	1.00[AMR][1000 genomes]
rs73394721	1.00[AMR][1000 genomes]
rs73396504	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	1.00[EUR][1000 genomes]
rs73400579	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73400580	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73400590	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7759845	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	1.00[EUR][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28111400-28129200	Weak transcription	Right Atrium	heart
2	chr6:28111800-28127000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28112000-28126600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:28113200-28127200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28113800-28125600	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:28115200-28125800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:28115200-28127200	Strong transcription	Fetal Brain Female	brain
8	chr6:28115400-28126600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:28115400-28127000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:28115400-28127000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr6:28115600-28125800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:28115600-28126200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:28115800-28125600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr6:28115800-28127400	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:28116000-28125800	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:28116000-28126800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:28116000-28127000	Strong transcription	Brain Hippocampus Middle	brain
18	chr6:28116000-28127200	Strong transcription	Stomach Smooth Muscle	stomach
19	chr6:28116200-28126400	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr6:28116200-28127000	Strong transcription	Fetal Lung	lung
21	chr6:28121400-28126400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:28121400-28127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:28121400-28127200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:28121600-28126000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:28121600-28126200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:28121600-28129000	Weak transcription	Fetal Intestine Small	intestine
27	chr6:28121600-28129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:28121800-28127000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:28121800-28127000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:28121800-28127400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:28121800-28127400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:28121800-28129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:28122000-28125800	Strong transcription	Primary T cells from cord blood	blood
34	chr6:28122000-28126400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:28122000-28129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:28122000-28129200	Weak transcription	Stomach Mucosa	stomach
37	chr6:28122200-28125800	Strong transcription	HSMM	muscle
38	chr6:28122200-28127600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:28122200-28129000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:28122200-28129000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:28122200-28129200	Weak transcription	Small Intestine	intestine
42	chr6:28122600-28129000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:28122600-28129200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:28122600-28129200	Weak transcription	Esophagus	oesophagus
45	chr6:28122600-28129200	Weak transcription	Fetal Stomach	stomach
46	chr6:28122800-28129200	Weak transcription	Colonic Mucosa	Colon
47	chr6:28122800-28129200	Weak transcription	Gastric	stomach
48	chr6:28122800-28129200	Weak transcription	HSMMtube	muscle
49	chr6:28122800-28129400	Weak transcription	Spleen	Spleen
50	chr6:28123000-28128000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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