Variant report

Variant	rs11962485
Chromosome Location	chr6:27891993-27891994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27890672..27893194-chr6:27950169..27951768,2	K562	blood:
2	chr6:27857667..27861764-chr6:27891119..27894873,6	K562	blood:
3	chr6:27890558..27893641-chr6:27899423..27901654,3	K562	blood:

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap]
rs11962868	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966528	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970638	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200471	1.00[CEU][hapmap]
rs57414310	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61072813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901437	1.00[CEU][hapmap]
rs6908414	0.85[AMR][1000 genomes]
rs6908615	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs6915101	1.00[CEU][hapmap]
rs6922530	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6928131	1.00[AMR][1000 genomes]
rs6936952	1.00[CEU][hapmap]
rs73384352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386634	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386651	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386656	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73386660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73392701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73394750	0.85[AFR][1000 genomes]
rs73396504	1.00[AMR][1000 genomes]
rs73398516	1.00[AMR][1000 genomes]
rs7748537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461422	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468227	1.00[CEU][hapmap]
rs9468253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468269	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv970030	chr6:27880682-27909942	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv527562	chr6:27886830-27895213	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27886800-27892600	Strong transcription	K562	blood

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