Variant report

Variant	rs6908414
Chromosome Location	chr6:28121828-28121829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28121677..28124555-chr6:28208936..28210698,3	K562	blood:
2	chr6:28056458..28058626-chr6:28119915..28122214,2	K562	blood:
3	chr6:28120467..28123016-chr6:28183065..28185019,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150669	1.00[EUR][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11962485	0.85[AMR][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	0.91[EUR][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs28366687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57484227	0.92[AFR][1000 genomes]
rs59457415	0.91[EUR][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916243	0.91[EUR][1000 genomes]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes]
rs73385807	0.91[EUR][1000 genomes]
rs73385810	0.91[EUR][1000 genomes]
rs73385818	0.91[EUR][1000 genomes]
rs73385870	0.91[EUR][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73392695	0.85[AMR][1000 genomes]
rs73392698	0.85[AMR][1000 genomes]
rs73394721	0.85[AMR][1000 genomes]
rs73396504	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73398516	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	1.00[EUR][1000 genomes]
rs73400579	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73400580	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73400590	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73401671	0.81[AFR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7759845	1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	1.00[EUR][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28111400-28129200	Weak transcription	Right Atrium	heart
2	chr6:28111800-28127000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28112000-28123600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:28112000-28124800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:28112000-28126600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:28112400-28124800	Strong transcription	HepG2	liver
7	chr6:28113200-28127200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:28113400-28124000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:28113800-28124600	Strong transcription	Dnd41	blood
10	chr6:28113800-28125600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:28115200-28123600	Strong transcription	NHEK	skin
12	chr6:28115200-28125800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:28115200-28127200	Strong transcription	Fetal Brain Female	brain
14	chr6:28115400-28123000	Strong transcription	Rectal Smooth Muscle	rectum
15	chr6:28115400-28123800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:28115400-28124400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:28115400-28124600	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:28115400-28124600	Strong transcription	NHDF-Ad	bronchial
19	chr6:28115400-28124800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:28115400-28125000	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr6:28115400-28125000	Strong transcription	Brain Germinal Matrix	brain
22	chr6:28115400-28125200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:28115400-28125200	Strong transcription	Fetal Intestine Large	intestine
24	chr6:28115400-28125200	Strong transcription	Fetal Muscle Leg	muscle
25	chr6:28115400-28125400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:28115400-28125400	Strong transcription	Ovary	ovary
27	chr6:28115400-28126600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:28115400-28127000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:28115400-28127000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:28115600-28122200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:28115600-28122200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:28115600-28123000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:28115600-28124200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:28115600-28125400	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr6:28115600-28125800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:28115600-28126200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:28115800-28123000	Strong transcription	Hela-S3	cervix
38	chr6:28115800-28123400	Strong transcription	Brain Angular Gyrus	brain
39	chr6:28115800-28123400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:28115800-28124800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:28115800-28124800	Strong transcription	Left Ventricle	heart
42	chr6:28115800-28125200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:28115800-28125200	Strong transcription	Adipose Nuclei	Adipose
44	chr6:28115800-28125200	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr6:28115800-28125400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:28115800-28125400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:28115800-28125600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:28115800-28127400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:28116000-28123000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:28116000-28123200	Strong transcription	Brain Cingulate Gyrus	brain

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