Variant report

Variant	rs9468293
Chromosome Location	chr6:28096196-28096197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28072796..28075387-chr6:28095316..28098001,2	K562	blood:
2	chr6:28091137..28098786-chr6:28103559..28111884,14	MCF-7	breast:
3	chr6:28046111..28048022-chr6:28095723..28098620,2	K562	blood:
4	chr6:28089970..28093154-chr6:28093915..28098032,5	K562	blood:
5	chr6:28078707..28081490-chr6:28095158..28097725,2	K562	blood:
6	chr6:27868230..27870687-chr6:28094988..28097736,2	K562	blood:

Variant related genes	Relation type
ENSG00000196812	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000261839	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10946952	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150669	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150671	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11966528	1.00[AMR][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs28366687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59457415	0.91[EUR][1000 genomes]
rs61072813	1.00[AMR][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932313	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes]
rs73385807	0.91[EUR][1000 genomes]
rs73385810	0.91[EUR][1000 genomes]
rs73385818	0.91[EUR][1000 genomes]
rs73385870	0.91[EUR][1000 genomes]
rs73386660	1.00[AMR][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73392701	1.00[AMR][1000 genomes]
rs73398516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73400579	1.00[EUR][1000 genomes]
rs73400580	0.91[EUR][1000 genomes]
rs73400590	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7748537	1.00[AMR][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]
rs9461421	1.00[AMR][1000 genomes]
rs9461422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs9468253	1.00[AMR][1000 genomes]
rs9468257	1.00[AMR][1000 genomes]
rs9468261	1.00[AMR][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28082600-28096200	Strong transcription	Dnd41	blood
2	chr6:28091200-28096600	Strong transcription	K562	blood
3	chr6:28092800-28101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:28092800-28103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:28092800-28103800	Weak transcription	Ovary	ovary
6	chr6:28092800-28104000	Weak transcription	Aorta	Aorta
7	chr6:28092800-28104000	Weak transcription	Small Intestine	intestine
8	chr6:28092800-28104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:28093000-28096200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:28093000-28096200	Weak transcription	HSMMtube	muscle
11	chr6:28093000-28096600	Weak transcription	NH-A	brain
12	chr6:28093000-28100200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:28093000-28100800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:28093000-28103200	Weak transcription	NHLF	lung
15	chr6:28093000-28103800	Weak transcription	Psoas Muscle	Psoas
16	chr6:28093000-28104000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:28093000-28104200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:28093200-28096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:28093200-28097600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:28093200-28102400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:28093200-28103200	Weak transcription	HMEC	breast
22	chr6:28093200-28103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:28093400-28096200	Weak transcription	Placenta	Placenta
24	chr6:28093400-28096200	Weak transcription	A549	lung
25	chr6:28093400-28096400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:28093400-28096400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr6:28093400-28098200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:28093400-28100600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:28093400-28102600	Weak transcription	NHDF-Ad	bronchial
30	chr6:28093400-28103200	Weak transcription	NHEK	skin
31	chr6:28093400-28103400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:28093600-28096200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:28093600-28096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:28093600-28096200	Genic enhancers	Fetal Brain Female	brain
35	chr6:28093600-28096200	Weak transcription	Left Ventricle	heart
36	chr6:28093600-28096800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:28093600-28096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:28093600-28097600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:28093600-28098000	Weak transcription	Brain Angular Gyrus	brain
40	chr6:28093600-28098600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:28093600-28098600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:28093600-28099200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr6:28093600-28100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:28093600-28101200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:28093600-28101200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:28093600-28101400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:28093600-28102200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:28093600-28102600	Weak transcription	Right Ventricle	heart
49	chr6:28093600-28103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:28093600-28103200	Weak transcription	Right Atrium	heart

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