Variant report

Variant	rs73400525
Chromosome Location	chr6:28143562-28143563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27858835..27861043-chr6:28141226..28144128,2	K562	blood:
2	chr6:28143030..28145517-chr6:28186267..28188999,2	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10946952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150669	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150671	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965542	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966042	0.91[EUR][1000 genomes]
rs11966237	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233667	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	0.91[EUR][1000 genomes]
rs28366687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs59457415	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908414	1.00[EUR][1000 genomes]
rs6910942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916243	0.91[EUR][1000 genomes]
rs6922530	1.00[AMR][1000 genomes]
rs6924324	1.00[EUR][1000 genomes]
rs6928131	1.00[EUR][1000 genomes]
rs6932313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385806	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385870	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73398516	1.00[EUR][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73400579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400580	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400590	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7748537	1.00[AMR][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]
rs9461421	1.00[AMR][1000 genomes]
rs9461422	0.89[AMR][1000 genomes]
rs9468261	1.00[AMR][1000 genomes]
rs9468262	1.00[AMR][1000 genomes]
rs9468269	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9468291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384757	chr6:28143357-28145067	Weak transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:28138000-28145600	Weak transcription	K562	blood
3	chr6:28139000-28144400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain

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