Variant report

Variant	rs73399084
Chromosome Location	chr6:28370778-28370779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
2	chr6:28114111..28116843-chr6:28370427..28372870,2	K562	blood:
3	chr6:28174164..28176650-chr6:28369447..28371283,2	K562	blood:
4	chr6:28369764..28371489-chr6:28380154..28383821,4	K562	blood:
5	chr6:28302778..28306478-chr6:28369638..28373643,3	K562	blood:

Variant related genes	Relation type
ENSG00000251877	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes]
rs1150671	0.91[EUR][1000 genomes]
rs11965542	1.00[EUR][1000 genomes]
rs11966042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966237	1.00[EUR][1000 genomes]
rs11967622	0.91[EUR][1000 genomes]
rs11969150	1.00[EUR][1000 genomes]
rs11970404	0.91[EUR][1000 genomes]
rs1233667	0.91[EUR][1000 genomes]
rs1233698	0.91[EUR][1000 genomes]
rs1233702	0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes]
rs213227	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213235	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159274	0.91[EUR][1000 genomes]
rs2232439	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2531801	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531802	0.91[EUR][1000 genomes]
rs2531812	0.91[EUR][1000 genomes]
rs2531816	0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes]
rs2531826	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531828	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28382592	0.82[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes]
rs2859350	0.91[EUR][1000 genomes]
rs2859353	0.82[EUR][1000 genomes]
rs2859354	0.91[EUR][1000 genomes]
rs2859359	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859362	1.00[EUR][1000 genomes]
rs2859367	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859371	0.91[EUR][1000 genomes]
rs2859376	0.91[EUR][1000 genomes]
rs2859377	0.91[EUR][1000 genomes]
rs2859378	0.91[EUR][1000 genomes]
rs385908	0.91[EUR][1000 genomes]
rs400987	0.91[EUR][1000 genomes]
rs403774	0.91[EUR][1000 genomes]
rs423118	0.91[EUR][1000 genomes]
rs59457415	1.00[EUR][1000 genomes]
rs61540948	0.91[EUR][1000 genomes]
rs62638680	1.00[EUR][1000 genomes]
rs6916243	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932394	1.00[EUR][1000 genomes]
rs719370	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73385806	1.00[EUR][1000 genomes]
rs73385807	1.00[EUR][1000 genomes]
rs73385810	1.00[EUR][1000 genomes]
rs73385818	1.00[EUR][1000 genomes]
rs73385870	1.00[EUR][1000 genomes]
rs73387810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	0.91[EUR][1000 genomes]
rs73400579	0.91[EUR][1000 genomes]
rs73400580	1.00[EUR][1000 genomes]
rs73400590	1.00[EUR][1000 genomes]
rs73401012	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402513	1.00[EUR][1000 genomes]
rs7739389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752608	1.00[ASN][1000 genomes]
rs7759845	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	0.91[EUR][1000 genomes]
rs9468306	0.91[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28368000-28370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28368600-28371200	Enhancers	K562	blood

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