Variant report

Variant	rs11966237
Chromosome Location	chr6:28233781-28233782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28232678..28234825-chr6:28301975..28304232,2	MCF-7	breast:
2	chr6:28232839..28237434-chr6:28303380..28305726,5	MCF-7	breast:
3	chr6:28020207..28021946-chr6:28231611..28234328,2	K562	blood:
4	chr6:28232169..28234255-chr6:28237329..28239836,2	MCF-7	breast:
5	chr6:28232995..28235984-chr6:28248211..28251032,3	MCF-7	breast:
6	chr6:28233221..28238495-chr6:28301018..28307259,12	K562	blood:
7	chr6:28233569..28236323-chr6:28583574..28585743,2	K562	blood:
8	chr6:28091663..28094187-chr6:28232383..28234529,2	MCF-7	breast:
9	chr6:28217166..28222171-chr6:28233596..28237356,7	MCF-7	breast:
10	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
11	chr6:28233021..28237962-chr6:28316234..28324041,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000182477	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000176933	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11965542	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966042	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11967622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969150	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970404	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333002	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs16893827	0.86[YRI][hapmap]
rs2108924	1.00[CEU][hapmap]
rs213227	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs213235	1.00[EUR][1000 genomes]
rs2159274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2232439	0.82[EUR][1000 genomes]
rs2531801	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2531802	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531816	0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531826	1.00[EUR][1000 genomes]
rs2531828	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28366687	0.91[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859350	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859353	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2859354	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859359	1.00[EUR][1000 genomes]
rs2859362	1.00[EUR][1000 genomes]
rs2859367	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2859371	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859375	1.00[CEU][hapmap]
rs2859376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859377	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859378	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59457415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61540948	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62638680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs6916243	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs6932394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719370	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73385806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387810	1.00[EUR][1000 genomes]
rs73398516	0.91[EUR][1000 genomes]
rs73399084	1.00[EUR][1000 genomes]
rs73400525	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400579	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400580	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400590	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401012	1.00[EUR][1000 genomes]
rs73401666	1.00[EUR][1000 genomes]
rs73402513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7739389	1.00[EUR][1000 genomes]
rs7759845	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9468269	0.82[EUR][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs9468305	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28227000-28233800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:28227400-28234400	Weak transcription	HSMMtube	muscle
3	chr6:28227600-28233800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:28227600-28233800	Weak transcription	HMEC	breast
5	chr6:28227800-28234400	Weak transcription	Right Atrium	heart
6	chr6:28228200-28234600	Weak transcription	Left Ventricle	heart
7	chr6:28228400-28233800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:28228400-28234000	Weak transcription	Psoas Muscle	Psoas
9	chr6:28230000-28233800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:28230000-28234200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:28230400-28234600	Weak transcription	Right Ventricle	heart
12	chr6:28232000-28233800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:28232000-28233800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:28232000-28233800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:28232000-28234400	Enhancers	Hela-S3	cervix
16	chr6:28232200-28233800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:28232200-28234000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:28232200-28234000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:28232200-28234200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:28232200-28234200	Weak transcription	Osteobl	bone
21	chr6:28232400-28234000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:28232400-28234000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:28232600-28234200	Enhancers	K562	blood
24	chr6:28232800-28234400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:28233000-28234200	Weak transcription	HUVEC	blood vessel
26	chr6:28233200-28234400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:28233400-28233800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:28233600-28233800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:28233600-28233800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:28233600-28233800	Enhancers	Dnd41	blood
31	chr6:28233600-28234200	Enhancers	GM12878-XiMat	blood
32	chr6:28233600-28234400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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