Variant report

Variant	rs2859375
Chromosome Location	chr6:28431251-28431252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28429774..28433738-chr6:28446930..28450436,3	K562	blood:
2	chr6:28423574..28426184-chr6:28428131..28431906,3	K562	blood:

Variant related genes	Relation type
ENSG00000219262	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10080420	0.80[ASN][1000 genomes]
rs10807036	0.81[ASN][1000 genomes]
rs1150722	1.00[JPT][hapmap]
rs1150723	1.00[JPT][hapmap]
rs1150725	1.00[JPT][hapmap]
rs11966042	1.00[CEU][hapmap]
rs11966237	1.00[CEU][hapmap]
rs1225600	1.00[JPT][hapmap]
rs12332986	0.80[ASN][1000 genomes]
rs2108924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213227	1.00[CEU][hapmap]
rs2159274	1.00[CEU][hapmap]
rs2191036	0.80[ASN][1000 genomes]
rs2531801	1.00[CEU][hapmap]
rs2531812	1.00[CEU][hapmap]
rs2531816	1.00[CEU][hapmap]
rs2531828	1.00[CEU][hapmap]
rs2799076	1.00[JPT][hapmap]
rs2859354	1.00[CEU][hapmap]
rs2859367	1.00[CEU][hapmap]
rs2859376	1.00[CEU][hapmap]
rs3757180	1.00[JPT][hapmap]
rs6456812	1.00[JPT][hapmap]
rs6456817	1.00[JPT][hapmap]
rs6456820	0.80[ASN][1000 genomes]
rs6899512	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6901001	1.00[JPT][hapmap]
rs6902583	1.00[JPT][hapmap]
rs6908459	1.00[JPT][hapmap]
rs6910120	1.00[JPT][hapmap]
rs6912921	1.00[JPT][hapmap]
rs6916243	1.00[CEU][hapmap]
rs6918631	1.00[JPT][hapmap]
rs6922161	1.00[JPT][hapmap]
rs6922302	1.00[JPT][hapmap]
rs6927023	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6929449	1.00[JPT][hapmap]
rs6938371	1.00[JPT][hapmap]
rs6941222	0.80[ASN][1000 genomes]
rs719370	1.00[CEU][hapmap]
rs7752448	1.00[JPT][hapmap]
rs7752721	1.00[JPT][hapmap]
rs7759845	1.00[CEU][hapmap]
rs7759855	1.00[JPT][hapmap]
rs7767897	1.00[JPT][hapmap]
rs9295769	1.00[JPT][hapmap]
rs9295770	1.00[JPT][hapmap]
rs9461450	1.00[JPT][hapmap]
rs9461457	1.00[JPT][hapmap]
rs9468384	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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