Variant report

Variant	rs6456817
Chromosome Location	chr6:28314422-28314423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28232695..28235468-chr6:28312123..28315031,2	K562	blood:
2	chr6:28301955..28305314-chr6:28311630..28316587,6	MCF-7	breast:
3	chr6:28241790..28245187-chr6:28314070..28316476,3	K562	blood:
4	chr6:28302467..28305224-chr6:28310834..28314742,3	MCF-7	breast:
5	chr6:28192916..28194526-chr6:28313827..28315700,2	K562	blood:
6	chr6:28307801..28310523-chr6:28312557..28314569,2	MCF-7	breast:
7	chr6:28112424..28114351-chr6:28312409..28315217,2	K562	blood:
8	chr6:28283987..28285681-chr6:28312968..28315468,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197062	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10080420	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1150715	1.00[ASN][1000 genomes]
rs1150722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1150723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1150725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1225600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12332986	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1600621	1.00[ASN][1000 genomes]
rs1679723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1736892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1778510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2108924	1.00[JPT][hapmap]
rs2191036	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2799076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28382606	1.00[EUR][1000 genomes]
rs28475822	1.00[ASN][1000 genomes]
rs2859375	1.00[JPT][hapmap]
rs34358978	1.00[EUR][1000 genomes]
rs34931542	1.00[EUR][1000 genomes]
rs3757180	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs384399	1.00[EUR][1000 genomes]
rs389603	1.00[EUR][1000 genomes]
rs399558	1.00[EUR][1000 genomes]
rs404343	1.00[EUR][1000 genomes]
rs408255	1.00[EUR][1000 genomes]
rs418898	1.00[EUR][1000 genomes]
rs422089	1.00[EUR][1000 genomes]
rs424426	1.00[EUR][1000 genomes]
rs426922	1.00[EUR][1000 genomes]
rs429875	1.00[EUR][1000 genomes]
rs434636	1.00[EUR][1000 genomes]
rs442174	1.00[EUR][1000 genomes]
rs443924	1.00[EUR][1000 genomes]
rs454746	1.00[EUR][1000 genomes]
rs6456812	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456820	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6899512	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6901001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6908459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910120	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912921	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6918043	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6918631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922161	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6922302	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923163	1.00[EUR][1000 genomes]
rs6927023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6929449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929559	1.00[JPT][hapmap]
rs6935589	1.00[EUR][1000 genomes]
rs6937042	1.00[EUR][1000 genomes]
rs6938371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941222	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7747772	0.84[ASN][1000 genomes]
rs7752448	1.00[JPT][hapmap]
rs7752721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7759855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7767897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9295769	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295770	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9461452	1.00[ASN][1000 genomes]
rs9461453	1.00[ASN][1000 genomes]
rs9461457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461464	1.00[EUR][1000 genomes]
rs9468328	1.00[ASN][1000 genomes]
rs9468335	1.00[ASN][1000 genomes]
rs9468337	1.00[ASN][1000 genomes]
rs9468341	1.00[ASN][1000 genomes]
rs9468375	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9468384	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9654587	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28304400-28317400	Weak transcription	Pancreas	Pancrea
2	chr6:28304800-28317200	Weak transcription	Aorta	Aorta
3	chr6:28305000-28317200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:28305000-28317200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:28305200-28317000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:28305200-28317000	Weak transcription	NHEK	skin
7	chr6:28305200-28317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:28305200-28317200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:28305200-28317200	Weak transcription	HSMMtube	muscle
10	chr6:28305800-28317200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:28309400-28314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:28313800-28314800	Weak transcription	K562	blood

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