Variant report

Variant	rs418898
Chromosome Location	chr6:28500796-28500797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28490306..28492074-chr6:28498929..28501971,3	K562	blood:
2	chr6:28499295..28501079-chr6:28547721..28550016,2	K562	blood:
3	chr6:28499347..28503956-chr6:28505758..28508912,7	K562	blood:
4	chr6:28498885..28501651-chr6:28502273..28504670,3	K562	blood:
5	chr6:28500567..28502083-chr6:28573952..28576413,2	K562	blood:
6	chr6:28490306..28492074-chr6:28498929..28501092,2	K562	blood:
7	chr6:28494181..28496072-chr6:28498095..28502015,3	K562	blood:
8	chr6:28455084..28458229-chr6:28499553..28502958,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198704	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10080420	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10434846	1.00[ASN][1000 genomes]
rs10733177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10755647	1.00[ASN][1000 genomes]
rs10807032	1.00[ASN][1000 genomes]
rs10807036	0.83[ASN][1000 genomes]
rs10807040	1.00[ASN][1000 genomes]
rs11758055	1.00[ASN][1000 genomes]
rs12332986	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1474986	0.94[ASN][1000 genomes]
rs2057295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191036	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2394119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34931542	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757180	1.00[EUR][1000 genomes]
rs381493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852211	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392471	0.88[ASN][1000 genomes]
rs394772	1.00[ASN][1000 genomes]
rs399558	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3999023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121090	1.00[ASN][1000 genomes]
rs418628	1.00[ASN][1000 genomes]
rs420436	1.00[ASN][1000 genomes]
rs420463	1.00[ASN][1000 genomes]
rs422089	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs424426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442174	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs443924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449074	1.00[ASN][1000 genomes]
rs454746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711176	1.00[ASN][1000 genomes]
rs4713172	1.00[ASN][1000 genomes]
rs4713174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007575	0.94[ASN][1000 genomes]
rs55860825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456812	1.00[EUR][1000 genomes]
rs6456817	1.00[EUR][1000 genomes]
rs6456820	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6456829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899512	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6901001	1.00[EUR][1000 genomes]
rs6906826	1.00[ASN][1000 genomes]
rs6908459	1.00[EUR][1000 genomes]
rs6910120	1.00[EUR][1000 genomes]
rs6912921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918631	1.00[EUR][1000 genomes]
rs6923163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925972	1.00[ASN][1000 genomes]
rs6927023	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6929449	1.00[EUR][1000 genomes]
rs6935589	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6937042	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6938371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941222	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7381746	1.00[ASN][1000 genomes]
rs7382159	1.00[ASN][1000 genomes]
rs7382309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7382583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739305	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752721	1.00[EUR][1000 genomes]
rs7761914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771490	1.00[ASN][1000 genomes]
rs7773193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911178	0.88[ASN][1000 genomes]
rs9295769	1.00[EUR][1000 genomes]
rs9295770	1.00[EUR][1000 genomes]
rs9393922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9468375	1.00[EUR][1000 genomes]
rs9468384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468394	1.00[ASN][1000 genomes]
rs9654587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv601211	chr6:28483482-28521316	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28500000-28502000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:28500000-28504400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:28500000-28504600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:28500200-28502200	Weak transcription	K562	blood

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