Variant report

Variant	rs7761914
Chromosome Location	chr6:28642509-28642510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28615726..28617849-chr6:28641065..28643260,2	MCF-7	breast:
2	chr6:28640241..28643540-chr6:28644556..28647910,4	K562	blood:
3	chr6:28507775..28510636-chr6:28641558..28643450,2	K562	blood:
4	chr6:28623399..28625951-chr6:28639865..28642751,2	MCF-7	breast:
5	chr6:28642383..28644323-chr6:28648282..28651107,2	K562	blood:

Variant related genes	Relation type
ENSG00000235570	Chromatin interaction
ENSG00000272278	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10080420	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10434846	1.00[ASN][1000 genomes]
rs10733177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10755647	1.00[ASN][1000 genomes]
rs10807032	1.00[ASN][1000 genomes]
rs10807036	0.83[ASN][1000 genomes]
rs10807040	1.00[ASN][1000 genomes]
rs11758055	1.00[ASN][1000 genomes]
rs12332986	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1474986	0.94[ASN][1000 genomes]
rs2057295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191036	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2394119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358978	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34931542	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs381493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384399	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852211	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392471	0.88[ASN][1000 genomes]
rs394772	1.00[ASN][1000 genomes]
rs399558	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3999023	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408255	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411538	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4121090	1.00[ASN][1000 genomes]
rs418628	1.00[ASN][1000 genomes]
rs418898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420436	1.00[ASN][1000 genomes]
rs420463	1.00[ASN][1000 genomes]
rs422089	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs424426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442174	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs443924	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449074	1.00[ASN][1000 genomes]
rs454746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711176	1.00[ASN][1000 genomes]
rs4713172	1.00[ASN][1000 genomes]
rs4713174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5007575	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55860825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456820	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6456829	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456832	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899512	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6906826	1.00[ASN][1000 genomes]
rs6923163	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925972	1.00[ASN][1000 genomes]
rs6927023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6935589	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6937042	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941222	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7381746	1.00[ASN][1000 genomes]
rs7382159	1.00[ASN][1000 genomes]
rs7382309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7382583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771490	1.00[ASN][1000 genomes]
rs7773193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911178	0.88[ASN][1000 genomes]
rs9393922	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461464	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9468384	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28634800-28643000	Weak transcription	K562	blood
2	chr6:28641400-28642600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:28641400-28642600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
4	chr6:28641400-28642800	Active TSS	Fetal Brain Female	brain
5	chr6:28641400-28643000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:28641600-28642600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:28641600-28642600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:28641600-28642600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:28641600-28642600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:28641600-28642600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:28641600-28642600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:28641600-28642600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:28641600-28642600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:28641600-28642600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
15	chr6:28641600-28642600	Active TSS	Brain Hippocampus Middle	brain
16	chr6:28641600-28642600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
17	chr6:28641600-28642600	Active TSS	HSMM	muscle
18	chr6:28641600-28642600	Active TSS	HSMMtube	muscle
19	chr6:28641600-28642600	Flanking Active TSS	HUVEC	blood vessel
20	chr6:28641600-28642600	Active TSS	NHDF-Ad	bronchial
21	chr6:28641600-28642800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:28641600-28642800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:28641600-28642800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr6:28641600-28642800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:28641600-28642800	Active TSS	Fetal Brain Male	brain
26	chr6:28641800-28642600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr6:28641800-28642600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
28	chr6:28641800-28642600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
29	chr6:28641800-28642600	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:28641800-28642600	Bivalent Enhancer	Colon Smooth Muscle	Colon
31	chr6:28641800-28642600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
32	chr6:28641800-28642600	Active TSS	Right Atrium	heart
33	chr6:28641800-28642800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:28641800-28642800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:28641800-28642800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:28641800-28643000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:28641800-28643000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr6:28641800-28643000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:28641800-28643000	Active TSS	A549	lung
40	chr6:28642000-28642600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:28642000-28642600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
42	chr6:28642000-28642600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
43	chr6:28642000-28642600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr6:28642000-28642600	Flanking Bivalent TSS/Enh	HepG2	liver
45	chr6:28642000-28642600	Flanking Active TSS	HMEC	breast
46	chr6:28642000-28642800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
47	chr6:28642000-28642800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:28642000-28643000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
49	chr6:28642200-28642600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:28642200-28642600	Bivalent/Poised TSS	Primary T cells from cord blood	blood

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