Variant report

Variant	rs34358978
Chromosome Location	chr6:28474617-28474618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28457939..28459727-chr6:28472888..28474894,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10080420	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10434846	0.93[ASN][1000 genomes]
rs10733177	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10755647	0.93[ASN][1000 genomes]
rs10807032	0.93[ASN][1000 genomes]
rs10807040	0.93[ASN][1000 genomes]
rs11758055	0.93[ASN][1000 genomes]
rs12332986	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1474986	0.88[ASN][1000 genomes]
rs2057295	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191036	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2394119	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28382606	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34931542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757180	1.00[EUR][1000 genomes]
rs381493	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs384399	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3852211	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs389603	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs392471	0.82[ASN][1000 genomes]
rs394772	0.93[ASN][1000 genomes]
rs399558	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3999023	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs402426	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs404343	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs408255	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs411538	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4121090	0.93[ASN][1000 genomes]
rs418628	0.93[ASN][1000 genomes]
rs418898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420436	0.93[ASN][1000 genomes]
rs420463	0.93[ASN][1000 genomes]
rs422089	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs424426	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs426922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs429875	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs434636	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs442174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs443924	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs449074	0.93[ASN][1000 genomes]
rs454746	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4711176	0.93[ASN][1000 genomes]
rs4713172	0.93[ASN][1000 genomes]
rs4713174	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5007575	0.88[ASN][1000 genomes]
rs55860825	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456812	1.00[EUR][1000 genomes]
rs6456817	1.00[EUR][1000 genomes]
rs6456820	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456829	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456832	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456833	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899512	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6901001	1.00[EUR][1000 genomes]
rs6906826	0.93[ASN][1000 genomes]
rs6908459	1.00[EUR][1000 genomes]
rs6910120	1.00[EUR][1000 genomes]
rs6912921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918631	1.00[EUR][1000 genomes]
rs6923163	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925972	0.93[ASN][1000 genomes]
rs6927023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929449	1.00[EUR][1000 genomes]
rs6935589	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937042	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941222	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7381746	0.93[ASN][1000 genomes]
rs7382159	0.93[ASN][1000 genomes]
rs7382309	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7382583	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7739305	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752721	1.00[EUR][1000 genomes]
rs7761914	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771490	0.93[ASN][1000 genomes]
rs7773193	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs911177	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs911178	0.82[ASN][1000 genomes]
rs9295769	1.00[EUR][1000 genomes]
rs9295770	1.00[EUR][1000 genomes]
rs9393922	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393923	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468375	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9468384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9468394	0.93[ASN][1000 genomes]
rs9654587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28473000-28475000	Enhancers	K562	blood
2	chr6:28473800-28474800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:28473800-28475000	Enhancers	Primary T cells from cord blood	blood
4	chr6:28473800-28475600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:28474000-28475000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:28474000-28475000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:28474000-28475200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:28474000-28475400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:28474000-28475400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:28474000-28475600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:28474000-28475800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:28474000-28475800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:28474000-28475800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:28474200-28475200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:28474200-28475400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:28474400-28474800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:28474400-28475200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:28474400-28475200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:28474400-28475800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:28474400-28475800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:28474600-28475000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:28474600-28475200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:28474600-28475200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:28474600-28475600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:28474600-28475800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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