Variant report

Variant	rs10755647
Chromosome Location	chr6:28632561-28632562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28624820..28630084-chr6:28630901..28635993,6	K562	blood:
2	chr6:28632209..28634978-chr6:28647206..28648913,2	MCF-7	breast:
3	chr6:28631525..28633126-chr6:28674832..28677325,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10080420	0.81[ASN][1000 genomes]
rs10434846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733177	1.00[ASN][1000 genomes]
rs10807032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807036	0.83[ASN][1000 genomes]
rs10807040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332986	0.81[ASN][1000 genomes]
rs1474986	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2057295	1.00[ASN][1000 genomes]
rs2191036	0.81[ASN][1000 genomes]
rs2394119	1.00[ASN][1000 genomes]
rs28382606	1.00[ASN][1000 genomes]
rs34358978	0.93[ASN][1000 genomes]
rs34931542	0.93[ASN][1000 genomes]
rs381493	1.00[ASN][1000 genomes]
rs384399	1.00[ASN][1000 genomes]
rs3852211	1.00[ASN][1000 genomes]
rs389603	1.00[ASN][1000 genomes]
rs392471	0.88[ASN][1000 genomes]
rs394772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399558	0.97[ASN][1000 genomes]
rs3999023	1.00[ASN][1000 genomes]
rs402426	1.00[ASN][1000 genomes]
rs404343	1.00[ASN][1000 genomes]
rs408255	1.00[ASN][1000 genomes]
rs411538	1.00[ASN][1000 genomes]
rs4121090	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418628	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418898	1.00[ASN][1000 genomes]
rs420436	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420463	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422089	0.97[ASN][1000 genomes]
rs424426	1.00[ASN][1000 genomes]
rs426922	1.00[ASN][1000 genomes]
rs429875	1.00[ASN][1000 genomes]
rs434636	1.00[ASN][1000 genomes]
rs442174	0.90[ASN][1000 genomes]
rs443924	1.00[ASN][1000 genomes]
rs449074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454746	1.00[ASN][1000 genomes]
rs4711176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713174	1.00[ASN][1000 genomes]
rs5007575	0.94[ASN][1000 genomes]
rs55860825	1.00[ASN][1000 genomes]
rs6456820	0.81[ASN][1000 genomes]
rs6456829	1.00[ASN][1000 genomes]
rs6456832	1.00[ASN][1000 genomes]
rs6456833	1.00[ASN][1000 genomes]
rs6899512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6906826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923163	1.00[ASN][1000 genomes]
rs6925972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6935589	0.93[ASN][1000 genomes]
rs6937042	0.93[ASN][1000 genomes]
rs6941222	0.81[ASN][1000 genomes]
rs7381746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7382159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7382309	1.00[ASN][1000 genomes]
rs7382583	1.00[ASN][1000 genomes]
rs7761914	1.00[ASN][1000 genomes]
rs7771490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773193	1.00[ASN][1000 genomes]
rs911177	1.00[ASN][1000 genomes]
rs911178	0.88[ASN][1000 genomes]
rs9393922	1.00[ASN][1000 genomes]
rs9393923	1.00[ASN][1000 genomes]
rs9461464	0.93[ASN][1000 genomes]
rs9468384	0.81[ASN][1000 genomes]
rs9468394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv20874	chr6:28630476-28633178	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627000-28632600	Weak transcription	K562	blood
2	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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