Variant report

Variant	rs10807036
Chromosome Location	chr6:28606397-28606398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28604890..28606588-chr6:28612280..28614878,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10434846	0.83[ASN][1000 genomes]
rs10733177	0.83[ASN][1000 genomes]
rs10755647	0.83[ASN][1000 genomes]
rs10807032	0.83[ASN][1000 genomes]
rs10807040	0.83[ASN][1000 genomes]
rs11758055	0.83[ASN][1000 genomes]
rs2057295	0.83[ASN][1000 genomes]
rs2108924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2159274	1.00[CEU][hapmap]
rs2394119	0.83[ASN][1000 genomes]
rs2531812	1.00[CEU][hapmap]
rs2531816	1.00[CEU][hapmap]
rs28382606	0.83[ASN][1000 genomes]
rs2859354	1.00[CEU][hapmap]
rs2859367	1.00[CEU][hapmap]
rs2859375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2859376	1.00[CEU][hapmap]
rs381493	0.83[ASN][1000 genomes]
rs384399	0.83[ASN][1000 genomes]
rs3852211	0.83[ASN][1000 genomes]
rs389603	0.83[ASN][1000 genomes]
rs394772	0.83[ASN][1000 genomes]
rs399558	0.81[ASN][1000 genomes]
rs3999023	0.83[ASN][1000 genomes]
rs402426	0.83[ASN][1000 genomes]
rs404343	0.83[ASN][1000 genomes]
rs408255	0.83[ASN][1000 genomes]
rs411538	0.83[ASN][1000 genomes]
rs4121090	0.83[ASN][1000 genomes]
rs418628	0.83[ASN][1000 genomes]
rs418898	0.83[ASN][1000 genomes]
rs420436	0.83[ASN][1000 genomes]
rs420463	0.83[ASN][1000 genomes]
rs422089	0.81[ASN][1000 genomes]
rs424426	0.83[ASN][1000 genomes]
rs426922	0.83[ASN][1000 genomes]
rs429875	0.83[ASN][1000 genomes]
rs434636	0.83[ASN][1000 genomes]
rs443924	0.83[ASN][1000 genomes]
rs449074	0.83[ASN][1000 genomes]
rs454746	0.83[ASN][1000 genomes]
rs4711176	0.83[ASN][1000 genomes]
rs4713172	0.83[ASN][1000 genomes]
rs4713174	0.83[ASN][1000 genomes]
rs55860825	0.83[ASN][1000 genomes]
rs6456829	0.83[ASN][1000 genomes]
rs6456832	0.83[ASN][1000 genomes]
rs6456833	0.83[ASN][1000 genomes]
rs6899512	1.00[JPT][hapmap]
rs6906826	0.83[ASN][1000 genomes]
rs6923163	0.83[ASN][1000 genomes]
rs6925972	0.83[ASN][1000 genomes]
rs6927023	1.00[JPT][hapmap]
rs73407126	0.80[AMR][1000 genomes]
rs7381746	0.83[ASN][1000 genomes]
rs7382159	0.83[ASN][1000 genomes]
rs7382309	0.83[ASN][1000 genomes]
rs7382583	0.83[ASN][1000 genomes]
rs7761914	0.83[ASN][1000 genomes]
rs7771490	0.83[ASN][1000 genomes]
rs7773193	0.83[ASN][1000 genomes]
rs911177	0.83[ASN][1000 genomes]
rs9393922	0.83[ASN][1000 genomes]
rs9393923	0.83[ASN][1000 genomes]
rs9468394	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28604000-28608800	Weak transcription	Placenta	Placenta
2	chr6:28605600-28611000	Weak transcription	H1 Cell Line	embryonic stem cell

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