Variant report
| Variant | rs73407126 |
|---|---|
| Chromosome Location | chr6:28605039-28605040 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28604890..28606588-chr6:28612280..28614878,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271440 | TF binding region |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs1015810 | 1.00[ASN][1000 genomes] |
| rs10807036 | 0.80[AMR][1000 genomes] |
| rs11962141 | 0.86[ASN][1000 genomes] |
| rs11966949 | 0.86[ASN][1000 genomes] |
| rs11968771 | 1.00[ASN][1000 genomes] |
| rs11969304 | 1.00[ASN][1000 genomes] |
| rs11970404 | 1.00[ASN][1000 genomes] |
| rs2078422 | 1.00[ASN][1000 genomes] |
| rs2159274 | 0.86[ASN][1000 genomes] |
| rs2531802 | 1.00[ASN][1000 genomes] |
| rs2531812 | 0.86[ASN][1000 genomes] |
| rs2531819 | 1.00[ASN][1000 genomes] |
| rs28382592 | 1.00[ASN][1000 genomes] |
| rs2859349 | 1.00[ASN][1000 genomes] |
| rs2859350 | 1.00[ASN][1000 genomes] |
| rs2859353 | 0.83[ASN][1000 genomes] |
| rs2859354 | 1.00[ASN][1000 genomes] |
| rs2859371 | 0.86[ASN][1000 genomes] |
| rs2859376 | 0.86[ASN][1000 genomes] |
| rs2859377 | 0.86[ASN][1000 genomes] |
| rs2859378 | 0.86[ASN][1000 genomes] |
| rs385908 | 1.00[ASN][1000 genomes] |
| rs400987 | 1.00[ASN][1000 genomes] |
| rs403774 | 1.00[ASN][1000 genomes] |
| rs423118 | 1.00[ASN][1000 genomes] |
| rs57147168 | 0.86[ASN][1000 genomes] |
| rs58945456 | 0.86[ASN][1000 genomes] |
| rs60137363 | 0.86[ASN][1000 genomes] |
| rs61540948 | 1.00[ASN][1000 genomes] |
| rs6923104 | 0.86[ASN][1000 genomes] |
| rs73391136 | 1.00[ASN][1000 genomes] |
| rs73391164 | 1.00[ASN][1000 genomes] |
| rs73391166 | 1.00[ASN][1000 genomes] |
| rs73391169 | 1.00[ASN][1000 genomes] |
| rs73402995 | 0.86[ASN][1000 genomes] |
| rs73403142 | 1.00[ASN][1000 genomes] |
| rs73404956 | 0.86[ASN][1000 genomes] |
| rs73404986 | 0.83[ASN][1000 genomes] |
| rs73405002 | 0.86[ASN][1000 genomes] |
| rs73409118 | 0.86[ASN][1000 genomes] |
| rs73409123 | 1.00[ASN][1000 genomes] |
| rs73409134 | 1.00[ASN][1000 genomes] |
| rs7742658 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020689 | chr6:28449137-28635171 | Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031671 | chr6:28575172-28678126 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28604000-28608800 | Weak transcription | Placenta | Placenta |
