Variant report

Variant	rs2859371
Chromosome Location	chr6:28425617-28425618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28425614-28425758	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28419679..28421910-chr6:28424314..28426376,2	K562	blood:
2	chr6:28366682..28368772-chr6:28423873..28426480,2	K562	blood:

Variant related genes	Relation type
OR2E1P	TF binding region
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1015810	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11962141	1.00[ASN][1000 genomes]
rs11965542	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11966042	0.91[EUR][1000 genomes]
rs11966237	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11966949	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967622	1.00[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970404	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2078422	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2159274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531801	0.91[EUR][1000 genomes]
rs2531802	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531816	0.91[EUR][1000 genomes]
rs2531819	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	0.91[EUR][1000 genomes]
rs28382592	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859349	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859350	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859353	0.90[EUR][1000 genomes]
rs2859354	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs2859367	0.91[EUR][1000 genomes]
rs2859376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859378	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385908	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs400987	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs403774	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs423118	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57147168	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58945456	1.00[ASN][1000 genomes]
rs59457415	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61540948	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6916243	0.91[EUR][1000 genomes]
rs6923104	1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719370	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73385870	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73400579	1.00[EUR][1000 genomes]
rs73400580	0.91[EUR][1000 genomes]
rs73400590	0.91[EUR][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs73402995	1.00[ASN][1000 genomes]
rs73404956	1.00[ASN][1000 genomes]
rs73405002	1.00[ASN][1000 genomes]
rs73407126	0.86[ASN][1000 genomes]
rs73409118	1.00[ASN][1000 genomes]
rs73409123	0.86[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7742658	1.00[ASN][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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