Variant report

Variant	rs6923104
Chromosome Location	chr6:28566516-28566517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28564953..28566880-chr6:28649469..28651175,2	MCF-7	breast:
2	chr6:28553736..28559121-chr6:28563340..28566855,6	MCF-7	breast:
3	chr6:28565424..28567496-chr6:28740751..28743719,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221191	Chromatin interaction
ENSG00000246350	Chromatin interaction
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1015810	0.86[ASN][1000 genomes]
rs11962141	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964748	1.00[EUR][1000 genomes]
rs11966949	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968771	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970404	0.86[ASN][1000 genomes]
rs2078422	0.86[ASN][1000 genomes]
rs2159274	1.00[ASN][1000 genomes]
rs2531802	0.86[ASN][1000 genomes]
rs2531812	1.00[ASN][1000 genomes]
rs2531819	0.86[ASN][1000 genomes]
rs28382592	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859349	0.86[ASN][1000 genomes]
rs2859350	0.86[ASN][1000 genomes]
rs2859354	0.86[ASN][1000 genomes]
rs2859371	1.00[ASN][1000 genomes]
rs2859376	1.00[ASN][1000 genomes]
rs2859377	1.00[ASN][1000 genomes]
rs2859378	1.00[ASN][1000 genomes]
rs385908	0.86[ASN][1000 genomes]
rs400987	0.86[ASN][1000 genomes]
rs403774	0.86[ASN][1000 genomes]
rs423118	0.86[ASN][1000 genomes]
rs57083092	1.00[EUR][1000 genomes]
rs57147168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58945456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59457415	0.86[ASN][1000 genomes]
rs60137363	1.00[ASN][1000 genomes]
rs61540948	0.86[ASN][1000 genomes]
rs73391136	0.86[ASN][1000 genomes]
rs73391164	0.86[ASN][1000 genomes]
rs73391166	0.86[ASN][1000 genomes]
rs73391169	0.86[ASN][1000 genomes]
rs73402995	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.86[ASN][1000 genomes]
rs73403179	0.82[EUR][1000 genomes]
rs73403189	0.82[EUR][1000 genomes]
rs73404956	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404986	0.91[EUR][1000 genomes]
rs73405002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407126	0.86[ASN][1000 genomes]
rs73409118	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73409123	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73409134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7742658	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28565000-28566600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:28565000-28566800	Active TSS	Hela-S3	cervix
3	chr6:28565000-28567000	Active TSS	A549	lung
4	chr6:28566000-28571200	Weak transcription	K562	blood
5	chr6:28566000-28574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:28566000-28574600	Weak transcription	Right Atrium	heart
7	chr6:28566400-28573800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:28566400-28574200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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