Variant report

Variant	rs2859350
Chromosome Location	chr6:28453153-28453154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28451721..28454293-chr6:28455250..28457902,2	MCF-7	breast:
2	chr6:28452420..28454018-chr6:28686803..28689231,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1015810	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962141	0.86[ASN][1000 genomes]
rs11965542	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966042	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11966237	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108924	1.00[CEU][hapmap]
rs213227	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2159274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531801	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2531802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs2531818	0.93[AFR][1000 genomes]
rs2531819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28382592	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859353	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2859354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs2859367	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2859371	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859375	1.00[CEU][hapmap]
rs2859376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859377	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859378	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs385908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403774	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs423118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57147168	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58945456	0.86[ASN][1000 genomes]
rs59457415	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60137363	0.86[ASN][1000 genomes]
rs61540948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6916243	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6923104	0.86[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719370	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73391136	1.00[ASN][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73402995	0.86[ASN][1000 genomes]
rs73404956	0.86[ASN][1000 genomes]
rs73404986	0.83[ASN][1000 genomes]
rs73405002	0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409123	1.00[ASN][1000 genomes]
rs73409134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7742658	0.86[ASN][1000 genomes]
rs7759845	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28451800-28456800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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