Variant report

Variant	rs61540948
Chromosome Location	chr6:28400077-28400078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28392901..28395106-chr6:28398520..28400756,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1015810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962141	0.86[ASN][1000 genomes]
rs11965542	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966042	0.91[EUR][1000 genomes]
rs11966237	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967622	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11968771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233698	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233702	1.00[EUR][1000 genomes]
rs2078422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2159274	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531801	0.91[EUR][1000 genomes]
rs2531802	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531816	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2531819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	0.91[EUR][1000 genomes]
rs28382592	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859353	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2859354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs2859367	0.91[EUR][1000 genomes]
rs2859371	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859376	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859377	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859378	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs385908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs423118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58945456	0.86[ASN][1000 genomes]
rs59457415	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6916243	0.91[EUR][1000 genomes]
rs6923104	0.86[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719370	0.91[EUR][1000 genomes]
rs73385806	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385870	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73400579	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400580	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400590	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73401671	0.88[AFR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73402995	0.86[ASN][1000 genomes]
rs73404956	0.86[ASN][1000 genomes]
rs73404986	0.83[ASN][1000 genomes]
rs73405002	0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7742658	0.86[ASN][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]
rs9468306	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385400-28402000	Weak transcription	Fetal Kidney	kidney
4	chr6:28385400-28402200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:28385600-28410800	Weak transcription	Lung	lung
6	chr6:28386000-28402200	Weak transcription	Osteobl	bone
7	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:28386800-28402200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
11	chr6:28389200-28410200	Weak transcription	NHLF	lung
12	chr6:28389400-28403200	Weak transcription	Adipose Nuclei	Adipose
13	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
19	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:28391400-28402400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
23	chr6:28391600-28401800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:28391600-28402000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:28391600-28402000	Weak transcription	Left Ventricle	heart
26	chr6:28391600-28402000	Weak transcription	Psoas Muscle	Psoas
27	chr6:28391600-28402200	Weak transcription	HSMMtube	muscle
28	chr6:28391600-28402200	Weak transcription	NH-A	brain
29	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
31	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:28392000-28410400	Weak transcription	NHEK	skin
33	chr6:28392200-28402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
35	chr6:28392400-28410000	Weak transcription	HMEC	breast
36	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:28393600-28410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:28393800-28402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:28393800-28404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:28393800-28410600	Weak transcription	Aorta	Aorta
41	chr6:28394000-28401800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:28394200-28409800	Weak transcription	Fetal Heart	heart
43	chr6:28394400-28405000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:28394800-28402000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:28395200-28401000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:28395200-28402200	Weak transcription	Primary T cells from cord blood	blood
47	chr6:28395200-28403800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:28395200-28410200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:28395400-28409400	Weak transcription	Fetal Brain Male	brain
50	chr6:28395800-28400800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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