Variant report

Variant	rs73401012
Chromosome Location	chr6:28381360-28381361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28369764..28371489-chr6:28380154..28383821,4	K562	blood:
2	chr6:28365464..28369045-chr6:28381351..28384382,6	K562	blood:
3	chr6:28379842..28382776-chr6:28383800..28386316,2	K562	blood:
4	chr6:28380846..28382983-chr6:28391973..28394917,2	K562	blood:
5	chr6:28380471..28382537-chr6:28386259..28388038,2	K562	blood:
6	chr6:28376587..28378827-chr6:28380769..28382729,2	K562	blood:

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction
ENSG00000251877	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes]
rs11965542	1.00[EUR][1000 genomes]
rs11966042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966237	1.00[EUR][1000 genomes]
rs11967622	0.91[EUR][1000 genomes]
rs11969150	1.00[EUR][1000 genomes]
rs11970404	0.91[EUR][1000 genomes]
rs1233667	0.91[EUR][1000 genomes]
rs1233698	0.91[EUR][1000 genomes]
rs1233702	0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes]
rs213227	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213235	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159274	0.91[EUR][1000 genomes]
rs2232439	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2531801	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531802	0.91[EUR][1000 genomes]
rs2531812	0.91[EUR][1000 genomes]
rs2531816	0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes]
rs2531826	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2531828	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28382592	0.82[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes]
rs2859350	0.91[EUR][1000 genomes]
rs2859353	0.82[EUR][1000 genomes]
rs2859354	0.91[EUR][1000 genomes]
rs2859359	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859362	1.00[EUR][1000 genomes]
rs2859367	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859371	0.91[EUR][1000 genomes]
rs2859376	0.91[EUR][1000 genomes]
rs2859377	0.91[EUR][1000 genomes]
rs2859378	0.91[EUR][1000 genomes]
rs385908	0.91[EUR][1000 genomes]
rs400987	0.91[EUR][1000 genomes]
rs403774	0.91[EUR][1000 genomes]
rs423118	0.91[EUR][1000 genomes]
rs59457415	1.00[EUR][1000 genomes]
rs61540948	0.91[EUR][1000 genomes]
rs62638680	1.00[EUR][1000 genomes]
rs6916243	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932394	1.00[EUR][1000 genomes]
rs719370	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73385806	1.00[EUR][1000 genomes]
rs73385807	1.00[EUR][1000 genomes]
rs73385810	1.00[EUR][1000 genomes]
rs73385818	1.00[EUR][1000 genomes]
rs73385870	1.00[EUR][1000 genomes]
rs73387810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	0.91[EUR][1000 genomes]
rs73400579	0.91[EUR][1000 genomes]
rs73400580	1.00[EUR][1000 genomes]
rs73400590	1.00[EUR][1000 genomes]
rs73401666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402513	1.00[EUR][1000 genomes]
rs7739389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752608	1.00[ASN][1000 genomes]
rs7759845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	0.91[EUR][1000 genomes]
rs9468306	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28377000-28386600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:28377600-28390200	Weak transcription	Fetal Lung	lung
4	chr6:28379400-28389200	Weak transcription	HSMM	muscle
5	chr6:28380800-28390600	Weak transcription	Brain Hippocampus Middle	brain

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