Variant report

Variant	rs73385806
Chromosome Location	chr6:28255085-28255086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28245880..28256877-chr6:28299741..28307557,21	K562	blood:
2	chr6:28251868..28254160-chr6:28254261..28256025,2	MCF-7	breast:
3	chr6:28246849..28251135-chr6:28253254..28258623,13	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction
ENSG00000137338	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946952	0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1150671	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11965542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966042	1.00[EUR][1000 genomes]
rs11966237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969150	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11970404	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333002	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233667	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233698	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233702	0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213227	0.92[EUR][1000 genomes]
rs213235	1.00[EUR][1000 genomes]
rs2159274	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2232439	0.82[EUR][1000 genomes]
rs2531801	1.00[EUR][1000 genomes]
rs2531802	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531816	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531826	1.00[EUR][1000 genomes]
rs2531828	1.00[EUR][1000 genomes]
rs28366687	0.91[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859350	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859353	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2859354	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859359	1.00[EUR][1000 genomes]
rs2859362	1.00[EUR][1000 genomes]
rs2859367	1.00[EUR][1000 genomes]
rs2859371	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859376	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859377	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859378	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs385908	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400987	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403774	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59457415	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61540948	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62638680	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6908414	0.91[EUR][1000 genomes]
rs6910942	0.91[EUR][1000 genomes]
rs6916243	1.00[EUR][1000 genomes]
rs6924324	0.91[EUR][1000 genomes]
rs6928131	0.91[EUR][1000 genomes]
rs6932313	0.91[EUR][1000 genomes]
rs6932394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719370	1.00[EUR][1000 genomes]
rs73385807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385870	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387810	1.00[EUR][1000 genomes]
rs73398516	0.91[EUR][1000 genomes]
rs73399084	1.00[EUR][1000 genomes]
rs73400525	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400579	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73400590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401012	1.00[EUR][1000 genomes]
rs73401666	1.00[EUR][1000 genomes]
rs73401671	0.82[AFR][1000 genomes]
rs73402513	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7739389	1.00[EUR][1000 genomes]
rs7759845	1.00[EUR][1000 genomes]
rs9468269	0.82[EUR][1000 genomes]
rs9468291	0.91[EUR][1000 genomes]
rs9468293	0.91[EUR][1000 genomes]
rs9468305	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468306	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28249800-28272200	Weak transcription	Spleen	Spleen
2	chr6:28250000-28258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:28250000-28258600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:28250000-28277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:28250000-28293800	Weak transcription	Gastric	stomach
6	chr6:28250200-28273800	Weak transcription	Thymus	Thymus
7	chr6:28250400-28265600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:28250400-28278600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:28250600-28267000	Weak transcription	NHEK	skin
10	chr6:28250600-28270800	Weak transcription	Fetal Heart	heart
11	chr6:28250600-28280600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:28250800-28256400	Strong transcription	A549	lung
13	chr6:28250800-28257600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:28250800-28270000	Weak transcription	Psoas Muscle	Psoas
15	chr6:28250800-28276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:28251000-28255200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:28251000-28255600	Strong transcription	Brain Substantia Nigra	brain
18	chr6:28251000-28258200	Strong transcription	Fetal Muscle Leg	muscle
19	chr6:28251000-28258600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:28251000-28258600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:28251000-28270800	Weak transcription	Colonic Mucosa	Colon
22	chr6:28251000-28273800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:28251000-28277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:28251000-28278800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:28251200-28256600	Strong transcription	Fetal Lung	lung
26	chr6:28251200-28257200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:28251200-28257600	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:28251200-28258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:28251200-28258400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:28251200-28259000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:28251200-28259400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:28251400-28255600	Strong transcription	K562	blood
33	chr6:28251400-28256200	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:28251400-28256600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:28251400-28257400	Strong transcription	Adipose Nuclei	Adipose
36	chr6:28251400-28258000	Strong transcription	Fetal Brain Female	brain
37	chr6:28251400-28262200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:28251600-28256200	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:28251600-28257600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:28251600-28258200	Strong transcription	Colon Smooth Muscle	Colon
41	chr6:28251600-28258200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:28251600-28258400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:28251600-28258400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:28251600-28258400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:28251600-28258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:28251800-28255200	Strong transcription	Ovary	ovary
47	chr6:28251800-28256400	Strong transcription	Brain Cingulate Gyrus	brain
48	chr6:28251800-28257600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:28251800-28257600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:28251800-28257600	Strong transcription	Brain Angular Gyrus	brain

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