Variant report

Variant	rs10946952
Chromosome Location	chr6:28073464-28073465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28070967..28073548-chr6:28102137..28104053,2	K562	blood:
2	chr6:28072483..28074243-chr6:28302332..28305412,3	K562	blood:
3	chr6:28072796..28075387-chr6:28095316..28098001,2	K562	blood:
4	chr6:28072485..28074418-chr6:28219456..28221633,2	K562	blood:
5	chr6:27858668..27861040-chr6:28071241..28073532,3	K562	blood:
6	chr6:27865036..27871044-chr6:28071199..28075672,5	K562	blood:
7	chr6:28054146..28055764-chr6:28072126..28074128,2	K562	blood:
8	chr6:28055848..28058102-chr6:28072977..28074750,2	MCF-7	breast:
9	chr6:28071334..28077239-chr6:28089535..28095129,7	MCF-7	breast:
10	chr6:28071987..28074599-chr6:28081357..28083551,2	MCF-7	breast:
11	chr6:28072063..28073906-chr6:28581888..28585717,3	K562	blood:
12	chr6:28072263..28073986-chr6:28075857..28078538,2	MCF-7	breast:
13	chr6:28058540..28063107-chr6:28071049..28073902,4	MCF-7	breast:
14	chr6:28060520..28063673-chr6:28071288..28074730,3	K562	blood:
15	chr6:28047190..28049373-chr6:28071837..28074142,3	MCF-7	breast:
16	chr6:28070830..28074243-chr6:28303566..28305711,3	K562	blood:
17	chr6:27775312..27777594-chr6:28072718..28075698,2	MCF-7	breast:
18	chr6:28047065..28050111-chr6:28070464..28074752,7	MCF-7	breast:
19	chr6:28071483..28073746-chr6:28184595..28186783,2	K562	blood:
20	chr6:28072038..28073860-chr6:28648173..28650609,2	K562	blood:
21	chr6:28072503..28074418-chr6:28220133..28221944,2	K562	blood:
22	chr6:28047642..28050085-chr6:28071642..28073977,3	K562	blood:
23	chr6:28072415..28074831-chr6:28247564..28249396,2	MCF-7	breast:
24	chr6:28057457..28060004-chr6:28072522..28074700,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000219891	Chromatin interaction
ENSG00000219392	Chromatin interaction
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1150669	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150671	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962485	1.00[CEU][hapmap]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11966528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233667	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61072813	1.00[AMR][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932313	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes]
rs73385807	0.91[EUR][1000 genomes]
rs73385810	0.91[EUR][1000 genomes]
rs73385818	0.91[EUR][1000 genomes]
rs73385870	0.91[EUR][1000 genomes]
rs73386660	1.00[AMR][1000 genomes]
rs73392701	1.00[AMR][1000 genomes]
rs73398516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73400579	1.00[EUR][1000 genomes]
rs73400580	0.91[EUR][1000 genomes]
rs73400590	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7748537	1.00[AMR][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]
rs9461421	1.00[AMR][1000 genomes]
rs9461422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes]
rs9468253	1.00[AMR][1000 genomes]
rs9468257	1.00[AMR][1000 genomes]
rs9468261	1.00[AMR][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468293	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28072000-28073600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:28072000-28073600	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:28072800-28073600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:28072800-28073600	Flanking Active TSS	K562	blood
5	chr6:28073000-28073600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:28073000-28073600	Flanking Active TSS	Hela-S3	cervix
7	chr6:28073000-28083800	Weak transcription	Aorta	Aorta
8	chr6:28073200-28073600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:28073200-28073600	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:28073200-28073600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr6:28073200-28073600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:28073200-28073600	Flanking Active TSS	HepG2	liver
13	chr6:28073200-28081600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:28073200-28081600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:28073200-28082200	Weak transcription	HSMM	muscle
16	chr6:28073200-28082400	Weak transcription	Fetal Stomach	stomach
17	chr6:28073200-28083000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:28073200-28083400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:28073200-28091400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:28073200-28091800	Weak transcription	Right Ventricle	heart
21	chr6:28073400-28073600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:28073400-28073600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr6:28073400-28073600	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:28073400-28073600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:28073400-28073600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:28073400-28073600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:28073400-28073600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:28073400-28073600	Enhancers	Brain Anterior Caudate	brain
29	chr6:28073400-28073600	Enhancers	Brain Germinal Matrix	brain
30	chr6:28073400-28073600	Enhancers	Colon Smooth Muscle	Colon
31	chr6:28073400-28073600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:28073400-28073600	Enhancers	Fetal Intestine Small	intestine
33	chr6:28073400-28073600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr6:28073400-28073600	Enhancers	NHEK	skin
35	chr6:28073400-28073800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:28073400-28074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:28073400-28074000	Active TSS	Psoas Muscle	Psoas
38	chr6:28073400-28075200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:28073400-28075200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:28073400-28075200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:28073400-28075400	Weak transcription	Brain Substantia Nigra	brain
42	chr6:28073400-28075400	Weak transcription	Lung	lung
43	chr6:28073400-28075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:28073400-28075600	Weak transcription	Ovary	ovary
45	chr6:28073400-28076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:28073400-28080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:28073400-28081200	Weak transcription	Adipose Nuclei	Adipose
48	chr6:28073400-28081600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:28073400-28081600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:28073400-28081600	Weak transcription	HSMMtube	muscle

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