Variant report

Variant	rs9468291
Chromosome Location	chr6:28093840-28093841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28092672..28095102-chr6:28302623..28304601,2	MCF-7	breast:
2	chr6:28091137..28098786-chr6:28103559..28111884,14	MCF-7	breast:
3	chr6:28069766..28072466-chr6:28092411..28094495,2	MCF-7	breast:
4	chr6:28089193..28090739-chr6:28092491..28094959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261839	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000269293	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150669	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11966528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs11967622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs12333002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213227	0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs28366687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59457415	0.91[EUR][1000 genomes]
rs61072813	1.00[AMR][1000 genomes]
rs62638680	0.91[EUR][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932394	0.91[EUR][1000 genomes]
rs73385806	0.91[EUR][1000 genomes]
rs73385807	0.91[EUR][1000 genomes]
rs73385810	0.91[EUR][1000 genomes]
rs73385818	0.91[EUR][1000 genomes]
rs73385870	0.91[EUR][1000 genomes]
rs73386660	1.00[AMR][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73392701	1.00[AMR][1000 genomes]
rs73398516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73400579	1.00[EUR][1000 genomes]
rs73400580	0.91[EUR][1000 genomes]
rs73400590	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7748537	1.00[AMR][1000 genomes]
rs7759845	0.91[EUR][1000 genomes]
rs9461421	1.00[AMR][1000 genomes]
rs9461422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes]
rs9468253	1.00[AMR][1000 genomes]
rs9468257	1.00[AMR][1000 genomes]
rs9468261	1.00[AMR][1000 genomes]
rs9468262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28082600-28096200	Strong transcription	Dnd41	blood
2	chr6:28091200-28096600	Strong transcription	K562	blood
3	chr6:28092800-28094600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28092800-28094600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:28092800-28101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:28092800-28103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:28092800-28103800	Weak transcription	Ovary	ovary
8	chr6:28092800-28104000	Weak transcription	Aorta	Aorta
9	chr6:28092800-28104000	Weak transcription	Small Intestine	intestine
10	chr6:28092800-28104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:28093000-28094000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:28093000-28094200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:28093000-28094400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:28093000-28094400	Weak transcription	HSMM	muscle
15	chr6:28093000-28094600	Weak transcription	Fetal Kidney	kidney
16	chr6:28093000-28095000	Weak transcription	Osteobl	bone
17	chr6:28093000-28095200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:28093000-28096000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:28093000-28096200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:28093000-28096200	Weak transcription	HSMMtube	muscle
21	chr6:28093000-28096600	Weak transcription	NH-A	brain
22	chr6:28093000-28100200	Weak transcription	Brain Anterior Caudate	brain
23	chr6:28093000-28100800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:28093000-28103200	Weak transcription	NHLF	lung
25	chr6:28093000-28103800	Weak transcription	Psoas Muscle	Psoas
26	chr6:28093000-28104000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:28093000-28104200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:28093200-28094000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:28093200-28094000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:28093200-28094000	Enhancers	Fetal Brain Male	brain
31	chr6:28093200-28094000	Enhancers	HUVEC	blood vessel
32	chr6:28093200-28094600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:28093200-28095000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:28093200-28095800	Weak transcription	Fetal Lung	lung
35	chr6:28093200-28096000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:28093200-28096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:28093200-28097600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:28093200-28102400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:28093200-28103200	Weak transcription	HMEC	breast
40	chr6:28093200-28103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:28093400-28094400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr6:28093400-28094600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:28093400-28094600	Weak transcription	Fetal Intestine Large	intestine
44	chr6:28093400-28094800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:28093400-28095400	Strong transcription	Colon Smooth Muscle	Colon
46	chr6:28093400-28096200	Weak transcription	Placenta	Placenta
47	chr6:28093400-28096200	Weak transcription	A549	lung
48	chr6:28093400-28096400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:28093400-28096400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:28093400-28098200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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