Variant report

Variant	rs12333002
Chromosome Location	chr6:28126570-28126571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28125801..28127363-chr6:28321236..28323956,2	K562	blood:
2	chr6:28123814..28127581-chr6:28129241..28131272,3	MCF-7	breast:
3	chr6:28124753..28127953-chr6:28128096..28131158,4	K562	blood:

Variant related genes	Relation type
ENSG00000226314	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10946952	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150671	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965542	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966237	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966528	0.89[AMR][1000 genomes]
rs11967622	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969150	0.82[EUR][1000 genomes]
rs1233667	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233698	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233702	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213235	0.82[EUR][1000 genomes]
rs2531826	0.82[EUR][1000 genomes]
rs28366687	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2859359	0.82[EUR][1000 genomes]
rs59457415	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62638680	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908414	0.91[EUR][1000 genomes]
rs6910942	0.91[EUR][1000 genomes]
rs6916243	0.82[EUR][1000 genomes]
rs6922530	0.89[AMR][1000 genomes]
rs6924324	0.91[EUR][1000 genomes]
rs6928131	0.91[EUR][1000 genomes]
rs6932313	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6932394	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385806	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385807	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385810	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385818	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385870	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73387810	0.82[EUR][1000 genomes]
rs73392701	0.89[AMR][1000 genomes]
rs73398516	0.91[EUR][1000 genomes]
rs73400525	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400580	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400590	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401666	0.82[EUR][1000 genomes]
rs73402513	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739389	0.82[EUR][1000 genomes]
rs7748537	0.89[AMR][1000 genomes]
rs7759845	0.82[EUR][1000 genomes]
rs9461421	0.89[AMR][1000 genomes]
rs9468257	0.89[AMR][1000 genomes]
rs9468261	0.89[AMR][1000 genomes]
rs9468262	0.89[AMR][1000 genomes]
rs9468269	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468291	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9468293	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9468305	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468306	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28111400-28129200	Weak transcription	Right Atrium	heart
2	chr6:28111800-28127000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28112000-28126600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:28113200-28127200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28115200-28127200	Strong transcription	Fetal Brain Female	brain
6	chr6:28115400-28126600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:28115400-28127000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:28115400-28127000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:28115800-28127400	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:28116000-28126800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:28116000-28127000	Strong transcription	Brain Hippocampus Middle	brain
12	chr6:28116000-28127200	Strong transcription	Stomach Smooth Muscle	stomach
13	chr6:28116200-28127000	Strong transcription	Fetal Lung	lung
14	chr6:28121400-28127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:28121400-28127200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:28121600-28129000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:28121600-28129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:28121800-28127000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:28121800-28127000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:28121800-28127400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:28121800-28127400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:28121800-28129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:28122000-28129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:28122000-28129200	Weak transcription	Stomach Mucosa	stomach
25	chr6:28122200-28127600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:28122200-28129000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:28122200-28129000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:28122200-28129200	Weak transcription	Small Intestine	intestine
29	chr6:28122600-28129000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:28122600-28129200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:28122600-28129200	Weak transcription	Esophagus	oesophagus
32	chr6:28122600-28129200	Weak transcription	Fetal Stomach	stomach
33	chr6:28122800-28129200	Weak transcription	Colonic Mucosa	Colon
34	chr6:28122800-28129200	Weak transcription	Gastric	stomach
35	chr6:28122800-28129200	Weak transcription	HSMMtube	muscle
36	chr6:28122800-28129400	Weak transcription	Spleen	Spleen
37	chr6:28123000-28128000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:28123000-28129000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:28123000-28129200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:28123000-28129200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:28123000-28129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:28123000-28129200	Weak transcription	Lung	lung
43	chr6:28123000-28129200	Weak transcription	Pancreas	Pancrea
44	chr6:28123000-28129200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:28123000-28129200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:28123000-28129200	Weak transcription	Hela-S3	cervix
47	chr6:28123200-28129200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:28123200-28129200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:28123200-28129200	Weak transcription	Fetal Thymus	thymus
50	chr6:28123400-28129000	Weak transcription	HMEC	breast

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