Variant report

Variant	rs2859359
Chromosome Location	chr6:28362708-28362709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28186853..28189269-chr6:28360764..28363379,2	K562	blood:
2	chr6:28332159..28333981-chr6:28361643..28364361,2	K562	blood:
3	chr6:28361885..28364070-chr6:28448691..28451219,2	K562	blood:
4	chr6:28321911..28323574-chr6:28361622..28363412,2	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1015810	0.91[EUR][1000 genomes]
rs1150669	0.91[EUR][1000 genomes]
rs1150671	0.91[EUR][1000 genomes]
rs11965542	1.00[EUR][1000 genomes]
rs11966042	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11966237	1.00[EUR][1000 genomes]
rs11967622	0.91[EUR][1000 genomes]
rs11969150	1.00[EUR][1000 genomes]
rs11970404	0.91[EUR][1000 genomes]
rs12333002	0.82[EUR][1000 genomes]
rs1233667	0.91[EUR][1000 genomes]
rs1233698	0.91[EUR][1000 genomes]
rs1233702	0.91[EUR][1000 genomes]
rs2078422	0.91[EUR][1000 genomes]
rs213227	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213235	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159274	0.91[EUR][1000 genomes]
rs2232439	0.82[EUR][1000 genomes]
rs2531801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531802	0.91[EUR][1000 genomes]
rs2531812	0.91[EUR][1000 genomes]
rs2531816	0.82[EUR][1000 genomes]
rs2531819	0.91[EUR][1000 genomes]
rs2531826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382592	0.82[EUR][1000 genomes]
rs2859349	0.91[EUR][1000 genomes]
rs2859350	0.91[EUR][1000 genomes]
rs2859353	0.82[EUR][1000 genomes]
rs2859354	0.91[EUR][1000 genomes]
rs2859362	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2859367	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859371	0.91[EUR][1000 genomes]
rs2859376	0.91[EUR][1000 genomes]
rs2859377	0.91[EUR][1000 genomes]
rs2859378	0.91[EUR][1000 genomes]
rs385908	0.91[EUR][1000 genomes]
rs400987	0.91[EUR][1000 genomes]
rs403774	0.91[EUR][1000 genomes]
rs423118	0.91[EUR][1000 genomes]
rs59457415	1.00[EUR][1000 genomes]
rs61540948	0.91[EUR][1000 genomes]
rs62638680	1.00[EUR][1000 genomes]
rs6916243	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928131	0.91[EUR][1000 genomes]
rs6932394	1.00[EUR][1000 genomes]
rs719370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73385806	1.00[EUR][1000 genomes]
rs73385807	1.00[EUR][1000 genomes]
rs73385810	1.00[EUR][1000 genomes]
rs73385818	1.00[EUR][1000 genomes]
rs73385870	1.00[EUR][1000 genomes]
rs73387810	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73399084	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73400525	0.91[EUR][1000 genomes]
rs73400579	0.91[EUR][1000 genomes]
rs73400580	1.00[EUR][1000 genomes]
rs73400590	1.00[EUR][1000 genomes]
rs73401012	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73401666	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73402513	1.00[EUR][1000 genomes]
rs7739389	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752608	0.91[ASN][1000 genomes]
rs7759845	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9468305	0.91[EUR][1000 genomes]
rs9468306	0.91[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28351600-28364600	Weak transcription	Right Atrium	heart
2	chr6:28352200-28365800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:28352600-28364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:28352600-28364400	Strong transcription	Fetal Thymus	thymus
5	chr6:28352600-28364600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:28352600-28365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:28352600-28365800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:28353000-28364800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:28354000-28364600	Strong transcription	Fetal Muscle Leg	muscle
10	chr6:28354200-28365600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr6:28354400-28364800	Strong transcription	Fetal Stomach	stomach
12	chr6:28354800-28363800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:28355800-28364800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:28356600-28363000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:28358600-28364200	Weak transcription	Stomach Mucosa	stomach
16	chr6:28358600-28365000	Weak transcription	Fetal Heart	heart
17	chr6:28359000-28364600	Weak transcription	NHEK	skin
18	chr6:28359200-28365000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:28359200-28366000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:28359200-28366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:28359200-28366600	Weak transcription	Right Ventricle	heart
22	chr6:28359400-28363800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:28359400-28364400	Weak transcription	Pancreas	Pancrea
24	chr6:28359400-28364400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:28359400-28364400	Weak transcription	NHDF-Ad	bronchial
26	chr6:28359400-28364600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:28359400-28364800	Weak transcription	Esophagus	oesophagus
28	chr6:28359400-28365800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:28359400-28365800	Weak transcription	Gastric	stomach
30	chr6:28359400-28365800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:28359400-28365800	Weak transcription	Small Intestine	intestine
32	chr6:28359400-28366000	Weak transcription	HSMMtube	muscle
33	chr6:28359400-28366600	Weak transcription	Psoas Muscle	Psoas
34	chr6:28359400-28366800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:28359600-28363200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:28359600-28366800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:28359800-28366800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:28359800-28366800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:28360600-28364800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:28360800-28363800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:28360800-28364000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:28360800-28364000	Weak transcription	Thymus	Thymus
43	chr6:28360800-28364600	Weak transcription	Spleen	Spleen
44	chr6:28360800-28365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:28360800-28365800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:28360800-28366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:28360800-28366600	Weak transcription	Colonic Mucosa	Colon
48	chr6:28361000-28363200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:28361000-28363600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:28361000-28363600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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