Variant report

Variant	rs11967622
Chromosome Location	chr6:28188614-28188615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:67)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:67 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr6:28188344-28188961	K562	blood:	n/a	n/a
2	HEY1	chr6:28188207-28188971	K562	blood:	n/a	n/a
3	BACH1	chr6:28188444-28188882	K562	blood:	n/a	n/a
4	POLR2A	chr6:28188279-28188902	GM12891	blood:	n/a	n/a
5	TAL1	chr6:28188327-28189103	K562	blood:	n/a	n/a
6	TBP	chr6:28188238-28188661	K562	blood:	n/a	n/a
7	MAX	chr6:28187972-28188656	K562	blood:	n/a	n/a
8	TAF7	chr6:28188286-28188884	K562	blood:	n/a	n/a
9	BCLAF1	chr6:28188084-28188988	K562	blood:	n/a	n/a
10	EGR1	chr6:28188260-28188880	K562	blood:	n/a	n/a
11	STAT5A	chr6:28188088-28188649	K562	blood:	n/a	n/a
12	POLR2A	chr6:28188012-28189002	K562	blood:	n/a	n/a
13	POLR2A	chr6:28187939-28189290	K562	blood:	n/a	n/a
14	MAZ	chr6:28188122-28188786	K562	blood:	n/a	n/a
15	RFX5	chr6:28188224-28189023	K562	blood:	n/a	n/a
16	ETS1	chr6:28188318-28188723	GM12878	blood:	n/a	n/a
17	RCOR1	chr6:28188052-28188708	K562	blood:	n/a	n/a
18	HCFC1	chr6:28188247-28188821	K562	blood:	n/a	n/a
19	TBL1XR1	chr6:28188386-28188911	K562	blood:	n/a	n/a
20	HEY1	chr6:28188170-28189102	K562	blood:	n/a	n/a
21	CEBPB	chr6:28188004-28188914	K562	blood:	n/a	n/a
22	MAFK	chr6:28188094-28188836	K562	blood:	n/a	n/a
23	TAF7	chr6:28188173-28188955	K562	blood:	n/a	n/a
24	BHLHE40	chr6:28188061-28188844	K562	blood:	n/a	n/a
25	CBX3	chr6:28187920-28188932	K562	blood:	n/a	n/a
26	POLR2A	chr6:28188315-28188847	K562	blood:	n/a	n/a
27	CHD2	chr6:28188270-28188996	K562	blood:	n/a	n/a
28	MYC	chr6:28188073-28188774	K562	blood:	n/a	n/a
29	PML	chr6:28187947-28188996	K562	blood:	n/a	n/a
30	CEBPD	chr6:28188167-28188967	K562	blood:	n/a	n/a
31	EP300	chr6:28188067-28188717	K562	blood:	n/a	n/a
32	JUND	chr6:28188250-28188853	K562	blood:	n/a	n/a
33	MXI1	chr6:28188126-28188953	K562	blood:	n/a	n/a
34	POLR2A	chr6:28188011-28188931	K562	blood:	n/a	n/a
35	POLR2A	chr6:28188162-28188961	GM12891	blood:	n/a	n/a
36	TBL1XR1	chr6:28188298-28188784	K562	blood:	n/a	n/a
37	POLR2A	chr6:28188290-28188962	GM12891	blood:	n/a	n/a
38	ARID3A	chr6:28188212-28188965	K562	blood:	n/a	n/a
39	TEAD4	chr6:28187854-28189036	K562	blood:	n/a	n/a
40	JUN	chr6:28188156-28188808	K562	blood:	n/a	n/a
41	TEAD4	chr6:28188145-28188921	K562	blood:	n/a	n/a
42	NR2F2	chr6:28188155-28188971	K562	blood:	n/a	n/a
43	ELK1	chr6:28188530-28188887	K562	blood:	n/a	n/a
44	ATF1	chr6:28188106-28188712	K562	blood:	n/a	n/a
45	TRIM28	chr6:28187904-28189066	K562	blood:	n/a	n/a
46	POLR2A	chr6:28187996-28189044	K562	blood:	n/a	n/a
47	CUX1	chr6:28188306-28188931	K562	blood:	n/a	n/a
48	POLR2A	chr6:28187984-28189003	K562	blood:	n/a	n/a
49	POLR2A	chr6:28188113-28189001	K562	blood:	n/a	n/a
50	BCLAF1	chr6:28188211-28189198	K562	blood:	n/a	n/a

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28184931..28189194-chr6:28190077..28194573,12	MCF-7	breast:
2	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
3	chr6:28187201..28188726-chr6:28351715..28353985,2	K562	blood:
4	chr6:28143030..28145517-chr6:28186267..28188999,2	K562	blood:
5	chr6:28186853..28189269-chr6:28360764..28363379,2	K562	blood:
6	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
7	chr6:28186460..28191177-chr6:28246836..28252039,7	K562	blood:
8	chr6:28047206..28049069-chr6:28188430..28191262,2	K562	blood:
9	chr6:28081584..28085062-chr6:28187366..28190014,3	K562	blood:
10	chr6:28153153..28155076-chr6:28188462..28190523,2	K562	blood:
11	chr6:28186877..28189778-chr6:28366321..28368559,2	K562	blood:
12	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
13	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
14	chr6:28187375..28189818-chr6:28709219..28712133,2	K562	blood:
15	chr6:28187353..28190192-chr6:28583076..28585455,2	K562	blood:
16	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
17	chr6:28188183..28189832-chr6:28247403..28249433,2	MCF-7	breast:
18	chr6:28087049..28089835-chr6:28187380..28190025,2	K562	blood:
19	chr6:28083562..28085258-chr6:28187886..28189759,2	K562	blood:
20	chr6:27857437..27861183-chr6:28187100..28189751,4	K562	blood:
21	chr6:28122601..28125129-chr6:28187296..28189318,2	K562	blood:
22	chr6:28135337..28137302-chr6:28186822..28190274,4	K562	blood:
23	chr6:28187278..28189645-chr6:28349848..28351599,2	K562	blood:
24	chr6:28187110..28190886-chr6:28224658..28229038,5	K562	blood:
25	chr6:27775362..27779371-chr6:28186093..28189957,4	K562	blood:
26	chr6:28114623..28117122-chr6:28187567..28190304,2	K562	blood:
27	chr6:28187359..28189911-chr6:28455377..28457870,2	K562	blood:
28	chr6:28184981..28190782-chr6:28297491..28307222,23	K562	blood:
29	chr6:28188437..28190413-chr6:28337561..28339400,2	K562	blood:
30	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
31	chr6:28130769..28134274-chr6:28187281..28190236,3	K562	blood:
32	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:
33	chr6:28163458..28166230-chr6:28188324..28191413,3	K562	blood:
34	chr6:28187117..28189206-chr6:28783315..28785702,2	K562	blood:
35	chr6:27834298..27836031-chr6:28187958..28190135,2	K562	blood:
36	chr6:27856777..27859583-chr6:28186890..28189718,3	K562	blood:
37	chr6:28188045..28189911-chr6:28456370..28458760,2	K562	blood:
38	chr6:28188391..28191172-chr6:28347437..28349201,2	K562	blood:
39	chr6:28017721..28019447-chr6:28188224..28189953,2	K562	blood:
40	chr6:27860430..27862717-chr6:28186992..28190210,3	K562	blood:

No data

Variant related genes	Relation type
TOB2P1	TF binding region
ZSCAN9	TF binding region
ENSG00000187626	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000189134	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000216901	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000219392	Chromatin interaction
ENSG00000137338	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10946952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1150669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965542	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966042	0.82[ASW][hapmap];1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs11966237	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969150	0.91[EUR][1000 genomes]
rs11970404	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12333002	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs213227	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs213235	0.91[EUR][1000 genomes]
rs2159274	1.00[EUR][1000 genomes]
rs2531801	0.91[EUR][1000 genomes]
rs2531802	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2531812	1.00[EUR][1000 genomes]
rs2531826	0.91[EUR][1000 genomes]
rs2531828	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28366687	1.00[EUR][1000 genomes]
rs2859359	0.91[EUR][1000 genomes]
rs2859362	0.91[EUR][1000 genomes]
rs2859367	0.91[EUR][1000 genomes]
rs2859371	1.00[EUR][1000 genomes]
rs57484227	0.81[AFR][1000 genomes]
rs59457415	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61540948	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62638680	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6910942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6916243	1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs6924324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs6928131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6932313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6932394	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs719370	0.91[EUR][1000 genomes]
rs73385806	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385807	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385810	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73385870	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73387810	0.91[EUR][1000 genomes]
rs73396504	0.82[AFR][1000 genomes]
rs73398516	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73399084	0.91[EUR][1000 genomes]
rs73400525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400579	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401012	0.91[EUR][1000 genomes]
rs73401666	0.91[EUR][1000 genomes]
rs73402513	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739389	0.91[EUR][1000 genomes]
rs7759845	0.82[ASW][hapmap];1.00[CEU][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs9468269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9468291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9468293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9468305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28186600-28192400	Weak transcription	Spleen	Spleen
2	chr6:28187000-28192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:28187000-28192400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:28187200-28189800	Weak transcription	NHEK	skin
5	chr6:28187200-28190800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:28187200-28192000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:28187200-28192000	Weak transcription	HMEC	breast
8	chr6:28187200-28192200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:28187400-28192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:28187400-28192000	Weak transcription	Hela-S3	cervix
11	chr6:28187800-28189000	Flanking Active TSS	K562	blood
12	chr6:28188000-28188800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:28188000-28188800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:28188000-28188800	Bivalent Enhancer	HepG2	liver
15	chr6:28188200-28191200	Weak transcription	Placenta	Placenta
16	chr6:28188400-28188800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:28188600-28188800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:28188600-28192400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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