Variant report
| Variant | rs73396504 |
|---|---|
| Chromosome Location | chr6:28017819-28017820 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28017721..28019447-chr6:28188224..28189953,2 | K562 | blood: | |
| 2 | chr6:28008817..28010926-chr6:28017296..28019171,2 | MCF-7 | breast: | |
| 3 | chr6:27859381..27860988-chr6:28015377..28018182,2 | K562 | blood: | |
| 4 | chr6:28012616..28016428-chr6:28017297..28020846,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233224 | Chromatin interaction |
| ENSG00000187763 | Chromatin interaction |
| ENSG00000197153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11962485 | 1.00[AMR][1000 genomes] |
| rs11967622 | 0.82[AFR][1000 genomes] |
| rs57484227 | 0.85[AFR][1000 genomes] |
| rs6908414 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs6924324 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6928131 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73386651 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73392695 | 1.00[AMR][1000 genomes] |
| rs73392698 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73394721 | 1.00[AMR][1000 genomes] |
| rs73398516 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73400579 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73400580 | 0.82[AFR][1000 genomes] |
| rs73400590 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022651 | chr6:27864217-28017997 | Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv981052 | chr6:27987196-28024382 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
