Variant report

Variant	rs11968771
Chromosome Location	chr6:28621603-28621604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28613173..28620583-chr6:28620759..28628573,15	K562	blood:

Variant related genes	Relation type
ENSG00000272278	Chromatin interaction
ENSG00000235570	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1015810	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11962141	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11964748	0.91[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969304	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970404	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078422	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159274	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531802	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531812	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2531819	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28382592	1.00[ASN][1000 genomes]
rs2859349	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859350	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859353	0.83[ASN][1000 genomes]
rs2859354	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859371	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859376	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859377	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2859378	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs385908	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs400987	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs423118	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083092	0.91[EUR][1000 genomes]
rs57147168	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58025129	0.81[EUR][1000 genomes]
rs58945456	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60137363	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61540948	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923104	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73391136	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391137	0.81[EUR][1000 genomes]
rs73391164	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391166	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391169	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402995	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73403142	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403155	0.81[EUR][1000 genomes]
rs73403156	0.81[EUR][1000 genomes]
rs73403159	0.81[EUR][1000 genomes]
rs73403165	0.81[EUR][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73404956	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73404986	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73405002	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73407126	1.00[ASN][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73409118	0.86[ASN][1000 genomes]
rs73409123	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742658	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7751604	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28616800-28625200	Weak transcription	Colonic Mucosa	Colon
2	chr6:28617200-28624600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28617200-28624800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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