Variant report

Variant	rs73407223
Chromosome Location	chr6:28786147-28786148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
3	chr6:28772556..28774593-chr6:28785044..28786627,2	K562	blood:
4	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759525	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961493	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964044	1.00[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes]
rs11966136	0.90[EUR][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966949	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968771	0.90[EUR][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083092	0.82[EUR][1000 genomes]
rs57147168	0.90[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs58971829	1.00[EUR][1000 genomes]
rs59858792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60137363	0.90[EUR][1000 genomes]
rs6456867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391136	0.90[EUR][1000 genomes]
rs73391137	0.90[EUR][1000 genomes]
rs73391164	0.90[EUR][1000 genomes]
rs73391166	0.90[EUR][1000 genomes]
rs73391169	0.90[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes]
rs73403142	0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[EUR][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403179	1.00[EUR][1000 genomes]
rs73403189	1.00[EUR][1000 genomes]
rs73407254	1.00[EUR][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs73409123	0.82[EUR][1000 genomes]
rs73409134	0.90[EUR][1000 genomes]
rs7742658	0.82[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751604	0.82[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28784200-28786200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28785800-28786200	Flanking Active TSS	K562	blood
3	chr6:28786000-28786400	Enhancers	A549	lung
4	chr6:28786000-28792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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