Variant report

Variant	rs7755410
Chromosome Location	chr6:28853937-28853938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11753443	1.00[ASN][1000 genomes]
rs11759525	1.00[ASN][1000 genomes]
rs11961493	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964044	0.89[EUR][1000 genomes]
rs11966547	0.89[EUR][1000 genomes]
rs11966708	1.00[ASN][1000 genomes]
rs11968644	1.00[ASN][1000 genomes]
rs3131103	0.89[EUR][1000 genomes]
rs34840519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58971829	0.89[EUR][1000 genomes]
rs59858792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456867	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393707	0.89[EUR][1000 genomes]
rs73403179	0.89[EUR][1000 genomes]
rs73403189	0.89[EUR][1000 genomes]
rs73407223	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407254	0.89[EUR][1000 genomes]
rs73408589	0.89[EUR][1000 genomes]
rs7749527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28849400-28863000	Weak transcription	Right Atrium	heart
2	chr6:28852400-28854200	ZNF genes & repeats	Fetal Thymus	thymus
3	chr6:28853000-28854000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:28853000-28854200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:28853000-28854200	Enhancers	Dnd41	blood
6	chr6:28853200-28854200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:28853200-28854200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:28853400-28854000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:28853400-28854200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr6:28853400-28854200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:28853400-28863000	Weak transcription	Fetal Kidney	kidney
12	chr6:28853600-28854200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:28853800-28854000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:28853800-28854000	Flanking Active TSS	HepG2	liver
15	chr6:28853800-28854200	Enhancers	Thymus	Thymus
16	chr6:28853800-28854400	ZNF genes & repeats	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links