Variant report

Variant	rs59858792
Chromosome Location	chr6:28855288-28855289
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28847771..28851189-chr6:28852484..28857224,5	MCF-7	breast:
2	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
3	chr6:28853392..28856962-chr6:28946124..28948045,3	K562	blood:

Variant related genes	Relation type
ENSG00000225595	Chromatin interaction
ENSG00000213916	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759525	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964044	1.00[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes]
rs11966136	0.90[EUR][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968644	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs58971829	1.00[EUR][1000 genomes]
rs6456867	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391164	0.90[EUR][1000 genomes]
rs73391166	0.90[EUR][1000 genomes]
rs73391169	0.90[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes]
rs73403142	0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[EUR][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403179	1.00[EUR][1000 genomes]
rs73403189	1.00[EUR][1000 genomes]
rs73407223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407254	1.00[EUR][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs7749527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28849400-28863000	Weak transcription	Right Atrium	heart
2	chr6:28853400-28863000	Weak transcription	Fetal Kidney	kidney
3	chr6:28854400-28856400	Weak transcription	K562	blood

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