Variant report

Variant	rs3131103
Chromosome Location	chr6:28893534-28893535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28887886..28894013-chr6:28935014..28940220,8	K562	blood:
2	chr6:28890727..28894097-chr6:28943047..28947323,5	MCF-7	breast:
3	chr6:28861810..28871966-chr6:28889574..28894668,20	MCF-7	breast:
4	chr6:28888957..28894217-chr6:28902105..28913114,27	MCF-7	breast:
5	chr6:28892042..28894995-chr6:28981382..28984107,2	K562	blood:
6	chr6:27856359..27859269-chr6:28891133..28894008,2	MCF-7	breast:
7	chr6:28804831..28806391-chr6:28892543..28895335,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000228666	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000263426	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes]
rs11759525	0.82[EUR][1000 genomes]
rs11961493	1.00[EUR][1000 genomes]
rs11964044	1.00[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes]
rs11966136	0.90[EUR][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58971829	1.00[EUR][1000 genomes]
rs59858792	1.00[EUR][1000 genomes]
rs6456867	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes]
rs73403142	0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403156	0.90[EUR][1000 genomes]
rs73403159	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403165	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403179	1.00[EUR][1000 genomes]
rs73403189	1.00[EUR][1000 genomes]
rs73407223	1.00[EUR][1000 genomes]
rs73407254	1.00[EUR][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv830622	chr6:28861667-29015804	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28892600-28895600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28892600-28895800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:28892800-28895200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:28892800-28895400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:28892800-28895400	Weak transcription	Fetal Kidney	kidney
6	chr6:28892800-28895600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:28892800-28895800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:28892800-28896000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:28892800-28897600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:28892800-28897600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:28893000-28893600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:28893000-28895600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:28893000-28898200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:28893400-28893600	Enhancers	K562	blood
15	chr6:28893400-28895800	Weak transcription	HepG2	liver

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