Variant report

Variant	rs58971829
Chromosome Location	chr6:28901402-28901403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes]
rs11759525	0.82[EUR][1000 genomes]
rs11961493	1.00[EUR][1000 genomes]
rs11964044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965253	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966136	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs59858792	1.00[EUR][1000 genomes]
rs6456867	1.00[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395702	1.00[AMR][1000 genomes]
rs73403142	0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407223	1.00[EUR][1000 genomes]
rs73407254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv830622	chr6:28861667-29015804	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28898000-28902000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:28898200-28901800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:28901200-28906600	Weak transcription	K562	blood
4	chr6:28901400-28902000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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