Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28689073..28690596-chr6:28736279..28738758,2	K562	blood:
2	chr6:28555206..28557867-chr6:28736797..28739499,2	K562	blood:
3	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
4	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
5	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
6	chr6:28737576..28739106-chr6:28862683..28864792,2	K562	blood:
7	chr6:28737910..28739642-chr6:28829627..28831368,2	K562	blood:
8	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11964044	0.90[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966547	0.90[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes]
rs3131103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34840519	0.90[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes]
rs58025129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58971829	0.90[EUR][1000 genomes]
rs59858792	0.90[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes]
rs6456867	0.90[EUR][1000 genomes]
rs73391136	1.00[EUR][1000 genomes]
rs73391137	1.00[EUR][1000 genomes]
rs73391164	1.00[EUR][1000 genomes]
rs73391166	1.00[EUR][1000 genomes]
rs73391169	1.00[EUR][1000 genomes]
rs73393707	0.90[EUR][1000 genomes]
rs73403142	1.00[EUR][1000 genomes]
rs73403155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403156	1.00[EUR][1000 genomes]
rs73403165	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409134	0.81[EUR][1000 genomes]
rs7749527	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28737200-28739600	Enhancers	K562	blood
4	chr6:28738200-28739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28738200-28740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr6:28738400-28738600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr6:28738400-28738600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr6:28738400-28739600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr6:28738400-28739600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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