Variant report

Variant	rs73391137
Chromosome Location	chr6:28671762-28671763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11753443	0.81[EUR][1000 genomes]
rs11961493	0.90[EUR][1000 genomes]
rs11963531	0.83[EUR][1000 genomes]
rs11965253	0.81[EUR][1000 genomes]
rs11966136	0.81[EUR][1000 genomes]
rs11966708	0.81[EUR][1000 genomes]
rs11966949	0.81[EUR][1000 genomes]
rs11968771	0.81[EUR][1000 genomes]
rs11969304	0.81[EUR][1000 genomes]
rs57147168	0.81[EUR][1000 genomes]
rs58025129	1.00[EUR][1000 genomes]
rs60137363	1.00[EUR][1000 genomes]
rs73391136	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73391164	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73391166	1.00[EUR][1000 genomes]
rs73391169	1.00[EUR][1000 genomes]
rs73403142	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73403155	1.00[EUR][1000 genomes]
rs73403156	1.00[EUR][1000 genomes]
rs73403159	1.00[EUR][1000 genomes]
rs73403165	1.00[EUR][1000 genomes]
rs73403179	0.90[EUR][1000 genomes]
rs73403189	0.90[EUR][1000 genomes]
rs73407223	0.90[EUR][1000 genomes]
rs73407254	0.90[EUR][1000 genomes]
rs73409134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28668600-28676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:28671200-28671800	Strong transcription	K562	blood
3	chr6:28671600-28672000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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