Variant report

Variant	rs73403189
Chromosome Location	chr6:28763800-28763801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28762168..28764957-chr6:28971752..28974125,2	K562	blood:
2	chr6:28761882..28764605-chr6:28861705..28864953,3	K562	blood:

Variant related genes	Relation type
ENSG00000197935	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes]
rs11759525	0.82[EUR][1000 genomes]
rs11961493	1.00[EUR][1000 genomes]
rs11962141	0.82[EUR][1000 genomes]
rs11964044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964748	0.82[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966136	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes]
rs11966949	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes]
rs11968771	0.90[EUR][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes]
rs57083092	0.82[EUR][1000 genomes]
rs57147168	0.90[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs58971829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59858792	1.00[EUR][1000 genomes]
rs60137363	0.90[EUR][1000 genomes]
rs6456867	1.00[EUR][1000 genomes]
rs6923104	0.82[EUR][1000 genomes]
rs73391136	0.90[EUR][1000 genomes]
rs73391137	0.90[EUR][1000 genomes]
rs73391164	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73391166	0.90[EUR][1000 genomes]
rs73391169	0.90[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403142	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405002	0.82[EUR][1000 genomes]
rs73407223	1.00[EUR][1000 genomes]
rs73407254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs73409123	0.82[EUR][1000 genomes]
rs73409134	0.90[EUR][1000 genomes]
rs7742658	0.82[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes]
rs7751604	0.82[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28761600-28763800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:28761800-28764200	Flanking Active TSS	HepG2	liver
4	chr6:28762800-28763800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:28763400-28764400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:28763400-28764400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:28763400-28764800	Active TSS	A549	lung
8	chr6:28763400-28770600	Weak transcription	HMEC	breast
9	chr6:28763600-28763800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
10	chr6:28763600-28764200	Active TSS	Hela-S3	cervix
11	chr6:28763600-28764400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:28763600-28764600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:28763600-28764600	Enhancers	GM12878-XiMat	blood
14	chr6:28763600-28765000	Active TSS	K562	blood
15	chr6:28763800-28764000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr6:28763800-28764000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:28763800-28764000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:28763800-28764000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:28763800-28764000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:28763800-28764000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:28763800-28764200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:28763800-28764200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:28763800-28764200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:28763800-28764400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:28763800-28764600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:28763800-28764600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:28763800-28764600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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