Variant report

Variant	rs11961493
Chromosome Location	chr6:28766865-28766866
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28757752..28760408-chr6:28765977..28767794,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11753443	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759525	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962141	0.82[EUR][1000 genomes]
rs11964044	1.00[EUR][1000 genomes]
rs11964748	0.82[EUR][1000 genomes]
rs11965253	0.90[EUR][1000 genomes]
rs11966136	0.90[EUR][1000 genomes]
rs11966547	1.00[EUR][1000 genomes]
rs11966708	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966949	0.90[EUR][1000 genomes]
rs11968644	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968771	0.90[EUR][1000 genomes]
rs3131103	1.00[EUR][1000 genomes]
rs34840519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57083092	0.82[EUR][1000 genomes]
rs57147168	0.90[EUR][1000 genomes]
rs58025129	0.90[EUR][1000 genomes]
rs58971829	1.00[EUR][1000 genomes]
rs59858792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60137363	0.90[EUR][1000 genomes]
rs6456867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73391136	0.90[EUR][1000 genomes]
rs73391137	0.90[EUR][1000 genomes]
rs73391164	0.90[EUR][1000 genomes]
rs73391166	0.90[EUR][1000 genomes]
rs73391169	0.90[EUR][1000 genomes]
rs73393707	1.00[EUR][1000 genomes]
rs73403142	0.90[EUR][1000 genomes]
rs73403155	0.90[EUR][1000 genomes]
rs73403156	0.90[EUR][1000 genomes]
rs73403159	0.90[EUR][1000 genomes]
rs73403165	0.90[EUR][1000 genomes]
rs73403179	1.00[EUR][1000 genomes]
rs73403189	1.00[EUR][1000 genomes]
rs73405002	0.82[EUR][1000 genomes]
rs73407223	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407254	1.00[EUR][1000 genomes]
rs73408589	1.00[EUR][1000 genomes]
rs73409123	0.82[EUR][1000 genomes]
rs73409134	0.90[EUR][1000 genomes]
rs7742658	0.82[EUR][1000 genomes]
rs7749527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751604	0.82[EUR][1000 genomes]
rs7755410	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762991	0.82[EUR][1000 genomes]
rs9461478	0.82[EUR][1000 genomes]
rs9468420	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3372934	chr6:28765323-28768021	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3372440	chr6:28765398-28767946	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3405136	chr6:28766073-28767271	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood
3	chr6:28765000-28769600	Weak transcription	K562	blood
4	chr6:28765400-28768400	Weak transcription	HepG2	liver

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