Variant report

Variant	rs7762991
Chromosome Location	chr6:28785438-28785439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28187117..28189206-chr6:28783315..28785702,2	K562	blood:
2	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
3	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
4	chr6:28783316..28785641-chr6:28791797..28793442,2	K562	blood:
5	chr6:28772556..28774593-chr6:28785044..28786627,2	K562	blood:
6	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11961493	0.82[EUR][1000 genomes]
rs11963531	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11964044	0.82[EUR][1000 genomes]
rs11966547	0.82[EUR][1000 genomes]
rs1925764	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131103	0.82[EUR][1000 genomes]
rs34840519	0.82[EUR][1000 genomes]
rs58971829	0.82[EUR][1000 genomes]
rs59858792	0.82[EUR][1000 genomes]
rs6456867	0.82[EUR][1000 genomes]
rs6924860	0.84[EUR][1000 genomes]
rs6929090	0.97[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73393707	0.82[EUR][1000 genomes]
rs73403179	0.82[EUR][1000 genomes]
rs73403189	0.82[EUR][1000 genomes]
rs73407223	0.82[EUR][1000 genomes]
rs73407249	0.83[ASN][1000 genomes]
rs73407250	0.83[ASN][1000 genomes]
rs73407254	0.82[EUR][1000 genomes]
rs73408589	0.82[EUR][1000 genomes]
rs7739709	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749527	0.82[EUR][1000 genomes]
rs7763504	0.83[ASN][1000 genomes]
rs9461478	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468420	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468430	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501112	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501420	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28784200-28786000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:28784200-28786200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28784400-28785600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:28784400-28785800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr6:28784400-28785800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:28784400-28786000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr6:28784400-28786000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:28784400-28786000	Active TSS	A549	lung
9	chr6:28784600-28785600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:28784600-28785600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:28784600-28785600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:28784600-28785600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:28784600-28785600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:28784600-28785600	Active TSS	Hela-S3	cervix
15	chr6:28784600-28785800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:28784600-28785800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:28784600-28785800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:28784600-28785800	Active TSS	HMEC	breast
19	chr6:28784600-28786000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr6:28784800-28785600	Active TSS	NHLF	lung
21	chr6:28784800-28785800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:28785000-28785600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:28785000-28785600	Active TSS	NHEK	skin
24	chr6:28785000-28785600	Active TSS	Osteobl	bone
25	chr6:28785000-28785800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:28785000-28785800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:28785000-28785800	Flanking Active TSS	HepG2	liver
28	chr6:28785000-28785800	Active TSS	K562	blood
29	chr6:28785000-28786000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:28785200-28785600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:28785200-28785600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr6:28785400-28785600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr6:28785400-28785600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:28785400-28785600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:28785400-28786000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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