Variant report
| Variant | rs11963531 |
|---|---|
| Chromosome Location | chr6:28754704-28754705 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28743433..28746834-chr6:28752955..28757172,5 | K562 | blood: | |
| 2 | chr6:28746864..28751693-chr6:28754692..28757727,4 | K562 | blood: | |
| 3 | chr6:28752766..28756379-chr6:28756550..28759154,4 | K562 | blood: | |
| 4 | chr6:28753746..28756116-chr6:28862923..28865863,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221191 | Chromatin interaction |
| ENSG00000224157 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1925764 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58025129 | 0.83[EUR][1000 genomes] |
| rs60137363 | 0.83[EUR][1000 genomes] |
| rs6924860 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73391136 | 0.83[EUR][1000 genomes] |
| rs73391137 | 0.83[EUR][1000 genomes] |
| rs73391164 | 0.83[EUR][1000 genomes] |
| rs73391166 | 0.83[EUR][1000 genomes] |
| rs73391169 | 0.83[EUR][1000 genomes] |
| rs73403142 | 0.83[EUR][1000 genomes] |
| rs73403155 | 0.83[EUR][1000 genomes] |
| rs73403156 | 0.83[EUR][1000 genomes] |
| rs73403159 | 0.83[EUR][1000 genomes] |
| rs73403165 | 0.83[EUR][1000 genomes] |
| rs73403168 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs73403188 | 0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7739709 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7762991 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9461478 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9468420 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9468430 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9501112 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9501420 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv883517 | chr6:28751727-28802149 | Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28750400-28756400 | Weak transcription | K562 | blood |
| 2 | chr6:28753200-28754800 | Bivalent/Poised TSS | iPS-15b Cell Line | embryonic stem cell |
