Variant report

Variant	rs73403188
Chromosome Location	chr6:28762025-28762026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28691994..28695396-chr6:28761030..28763739,3	K562	blood:
2	chr6:28761882..28764605-chr6:28861705..28864953,3	K562	blood:
3	chr6:28760359..28762539-chr6:28774291..28776179,2	K562	blood:

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11963531	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6924860	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6929090	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73403168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73407249	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73407250	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7763504	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9461478	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9468420	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28759600-28763600	Weak transcription	Hela-S3	cervix
2	chr6:28761600-28762200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:28761600-28762400	Active TSS	HMEC	breast
4	chr6:28761600-28762600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:28761600-28762600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:28761600-28762800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:28761600-28762800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:28761600-28763000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr6:28761600-28763000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:28761600-28763800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:28761800-28762200	Bivalent Enhancer	Adipose Nuclei	Adipose
13	chr6:28761800-28762200	ZNF genes & repeats	Right Atrium	heart
14	chr6:28761800-28762400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:28761800-28762400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
16	chr6:28761800-28762400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:28761800-28762400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr6:28761800-28762400	Active TSS	NHDF-Ad	bronchial
19	chr6:28761800-28762600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr6:28761800-28762600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:28761800-28762600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr6:28761800-28762600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:28761800-28762600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr6:28761800-28762600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr6:28761800-28762600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:28761800-28762600	Flanking Active TSS	Placenta	Placenta
27	chr6:28761800-28762600	Active TSS	HSMM	muscle
28	chr6:28761800-28762600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
29	chr6:28761800-28762600	Bivalent/Poised TSS	NH-A	brain
30	chr6:28761800-28762600	Bivalent/Poised TSS	NHEK	skin
31	chr6:28761800-28762800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:28761800-28762800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:28761800-28762800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:28761800-28762800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:28761800-28762800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:28761800-28762800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:28761800-28762800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:28761800-28762800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:28761800-28762800	Bivalent/Poised TSS	NHLF	lung
40	chr6:28761800-28763000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:28761800-28763000	Active TSS	A549	lung
42	chr6:28761800-28763600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr6:28761800-28763600	Flanking Active TSS	K562	blood
44	chr6:28761800-28764200	Flanking Active TSS	HepG2	liver
45	chr6:28762000-28762200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:28762000-28762200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
47	chr6:28762000-28762200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:28762000-28762200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:28762000-28762200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:28762000-28762200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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